G588263


Basic Information

Item Value
gene id G588263
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24278943 ~ 24279336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU670899
ctgcgtttccagtggtgctggggactccctggctggcccggcacaatcctaaaatttcgtggagacagggggttctccaggggtggtcagaggagtgttctggaaggtgtttgggagtttccatcggtgccacgtcggtggagagtccagaccagggttccacggtgtgcattccccccgagtatgccgatttggcaatcgctttcagtaaagtgaaagcgactaaattaccaccttatcgaccgggaagggattgtacgatagatctccaggtagacgctgcgcttcccaagagtcacgtgtacccgctgtcccaggaggagacgttggcaatggagacatatgtcacggaggcgctgggacaggggtacattcggtcctccatttcacccga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU670899 True 394 lncRNA 0.56 1 24278943 24279336

Neighbor

gene id symbol gene type direction distance location
LOC110527540 LOC106533352 coding upstream 657892 23609520 ~ 23621369 (+)
LOC110527538 LOC106575225 coding upstream 961473 23306816 ~ 23317470 (+)
aox6 LOC106575224 coding upstream 989129 23271803 ~ 23289814 (+)
LOC110527536 LOC106575223 coding upstream 1048209 23227353 ~ 23230734 (+)
LOC110527535 LOC106575222 coding upstream 1057940 23193574 ~ 23221003 (+)
LOC110527542 LOC106574301 coding downstream 30502 24309838 ~ 24352001 (+)
LOC110527543 LOC106575235 coding downstream 79332 24358668 ~ 24426341 (+)
gja5b LOC106574307 coding downstream 294070 24573406 ~ 24583614 (+)
setd4 setd4 coding downstream 444290 24723626 ~ 24732898 (+)
itsn1 LOC100286499 coding downstream 458861 24738197 ~ 24800444 (+)
G588115 NA non-coding upstream 4147 24180245 ~ 24274796 (+)
G588080 NA non-coding upstream 148229 24130401 ~ 24130714 (+)
G588051 NA non-coding upstream 168488 24110209 ~ 24110455 (+)
G587876 NA non-coding upstream 306934 23971753 ~ 23972009 (+)
G587847 NA non-coding upstream 337511 23940158 ~ 23941432 (+)
G588300 NA non-coding downstream 56099 24335435 ~ 24403052 (+)
G588364 NA non-coding downstream 178887 24458223 ~ 24458487 (+)
G588365 NA non-coding downstream 180724 24460060 ~ 24460271 (+)
G588368 NA non-coding downstream 181798 24461134 ~ 24462883 (+)
G587660 NA other upstream 470943 23807722 ~ 23808000 (+)
G586685 NA other upstream 1263823 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 1575122 22684527 ~ 22722539 (+)
c7h10orf53 cssa17h10orf53 other upstream 1918716 22356500 ~ 22360232 (+)
G588755 NA other downstream 624995 24904331 ~ 24905581 (+)
G589734 NA other downstream 1324269 25587088 ~ 25608606 (+)
G589933 NA other downstream 1724594 26003930 ~ 26025309 (+)
G590936 gart other downstream 2273218 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 2298071 26577407 ~ 26577933 (+)

Expression


Co-expression Network