G588435


Basic Information

Item Value
gene id G588435
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24347560 ~ 24351991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671098
TCACTATACTTTATTTTAGGGACAATAGCATACAATTTCTCTGTACAATATTTAACATCCACTTCCAACCAGGCATCTGAAAAAGTTTGTTAAATAACTTCAAAGCATAAAAATGATTGGCAAGTCCACTTGCCAATAGAACAGTCATTTGTGCCAAGTCACACTGTTCGACTATCAGCAAATACAGAACCGAAGCTAACCTAGGTTTAGCTTTAGGGTTGTTTTGAGAGGAAGTGTGTTACAGAAAACACTGTCTGCTGGTCACATACAAGGAATAACATTCTTGCAACACTGCTGGAACATTGTAGCAATGGCATCTCAATGTTGTAGTGTAACATAAGGGTCTGAGCTAGGATGTCTGAGGTAAAACAATGACTATTTTCACACTACAGAGCCAACCCGAACCATACTTTGCTGGCTCTGATATTTTCCGATCACATTGTCATTTTCAGTTTTcttccagcaactatggtggatgcTTAACCAGGCCATCTCTATCCAACTCGGTTCGGCtcagctcagtagtgtgaaaatggTATATAACCGTTgattcagggttccatttgaggGGATTTTCATCAGACCACCTTAGAAAGAAATGAGTCTCACCTGGGGAAGGAAGAGTGACCGTTTTGGGCCATAAATTGATACAATATAaaaacatagatatacaaaataAAACAGGTAAAATCTTATTATGTAATAATTCATTTATCTGGGATTTTTTCCCCGTCTTTGTGATATATTCTAATAACAATAGAAACAACCTCATGCTATATCCATCCTCTACGATCTAAAAATGacatatatatttacataatgtGCATTTCAATATCCCAGTcaaatctgaagtcaaatgttatTTGGGCTTTCTGAAGTTTATCTGAAAGAAAGTCAACTCTCACAAGAAGGCCAAGGTCTGATCAACTAAGAAGATTGTAGTGTGGCTCGGGGTTTAAAACGCCTGTACAGTGAAATCAGCTTTGTAGAAGTAGTTGTGGTTTAAAAATAAAATCATGTACACAAAATGATATCCTCAAAATACCAGAAATCATCAGAGGACCACAACATGGCTAcatatgtatttttttctcagAAGCACATACGACAACCAAAATAatgcagtagtactgtagtgatTGTATATCAGACTGTTGGTTCACCACTAACTGCTTGGAAACTGGTGCCCCTTCCACTCTTCCTCCAATGCCCTTTGCTTGCTAGTTGCTATTGCTGAGCGCTACAGGCTTCCAGTGTGTagcgagggagggggggggggatttcacaGTAACGGCCACCATTCTATGGCTTTCTCAATTAAAATGTCCTTGAATcctcacatcccctctcctcctcctcaaccataTTAGGCAAGGAGATAGGatgtgaggaatcaaggaaaaaTACTAATTGCGATAGAGCCTACATCCGCTGCGAGACCACTGGCCAACTGCAGCCTTTACCCCCAAGAGTACAGCCACAATCTAGTAATACAGTTGGGCTTTCCCTAAGTCCGTTCCACTGTCTTTCAGATAGAGGTAAAGTAATAATTGTTTGAGTTGGCACCTGCCCACCTGCTCTCTGTCTAGTACCCAAAAGCTCAGCAAATCATTaaaacatcaatagacaagattaaaaatgttttttttaattgctACAGTGGTGTGAAAGtcgctcctgcagcaatgcaAGTACGGACGTTGCACCATTCTGCACGGGttgcatatactgtagtaattactGAAAAGCATAGTATTGAATCCCTGAACGTTGTTGAAGATGTTGTAATTCCAGTTTAAACACTGACTAGGTGTGAAGAGAGAGAATGCAAAGATGAACGCATCATCACCTGTGTCAATGTCACCCAGAAGACAAATCTGAGCTCATACAACAAGCTAGAAATGGAATATAGAACACATTCACATTCAAATTCCGGAAGGACGACAAGAGTCATCCTTGTTTTGCCCAGGGTGGGTCTACAGTAGTAACGTTGTCACACTGATTAAAAGGCTCAACTGAGTTGAGATGATAGAGAGGCTAGAAGTAGAGATGTTTTAACACTACGGTTGAGATGGCACCAGGAAGCGAGAGAGTCAGTGTGAAAGGTCACCCGCGTCTCAAAGCAGAAGGGTAGTAGCtagggactggagagagagagagagaagggtagtagctagggactggagagagagagagaagggtagtagctagggactggagagagagagagaagggtagtagctagggactggagagagagagagaagggtagtaGCTAGGGACTGGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGGCAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAGCAAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCAGGAGAGACAGAAGGGTAGTAAGCAAGGGACTCAGGAGAGACAGAAGGGTAGTAAGCAAGGGACTCAGGAGAGACAGAAGGGTAGTAGCTAGGGACTCGAGAAGTAGCTAGGGACTGGGAGATACAGATGGATAATAACTAGGGAGTCAAGAGAGACAGAAGAGTAGCTTCCTGAGCTTGTTTAAAAAGAAGACCAAAAGATAACCAAAAGGCATGCTCACATCATTAAATACTCGATTGACACAGCAAGCCAAAATAAGGAAGAAGTgcttttttaaaatcattttcAATGAGTTAGGGGGTTATTGAAATACTCTTAAAATGTAGGAGTAACATGTTTTCAATAAAACACTAATTCAAACCGCAAGGAaggacaaaataagaaaaataataaGGAAAAAAACAAGGACAAAAAAAATCGTGCAAAGAAGAAAAACAAGAAGGCAGATGTGTGTAAATGTATGGTCATACAACTCTTGGCGGGatagtttaaaaaaaactgtGGTGATAATGGTTCTATTTTCACCTGCCACAgctgtacagtatacagtacgaTAATACCAAAGTAATGATGTCATCTGAACGGTTTCCAGAGAGATTGTTGTCGTCACAGAAATATACTTAATAGAACTAGAAACAACAGTAGGTCTGTCTCTAGAGTTGCAGTGTTGTAATGAAGATGGAACTGAGGTATACCTTGTTGATTTGAGGGAGGTCTATGGTTTTGCTTTCAAAGTAGTAACGCTTGGACATggatccccccccacccccctaaaATAAACCTTGACTGCTattgttttgatatgatgtacAGCAGCAGTACACGTGACATTCAGAAGCTGTTTCTTATTGGCATTACAAGTTGTCATTATCATTTAAACACAGAAAGAAAACCGCAAAGGAATTTTAAAACAAGTTGCCCTTTTTCCTTCACTGAGCCGTAACAGTTCCTTTTGGAGagtccatcctctccctcttctttttcTTAGAAAATAGAACAGAAGTCTGTTAGGCGGTCCTAGTGTTTtcttcatatataaaatatcccttTTGCCCAGCTCACAGCGTTTTGTTACGACCTAGTGTTGCTCTTTTGAAGGAGTCTGTTGTACAGTTTGAGGCTCGCTATGGGAGTCCATCTGAATCCAACACATCGTGATACTATGAAGTGGGTAGAAACCAAACCAGTGTTGGTGGGCACAGCCAGGTATTTCCTGAATGACAGTAGTGTAGCGCCCAGCACTAAAACACAACCACGCCATGCCAGCACGCCCATCTGAGGGGGTCAAGGGTCAGAAATGAACCCGGGATCACCCAGAGTTCATGATCCTGAACGGGCCACTCTGGTCGATCAATGTGTACCTGAAAACATCCAGTCAAAATAGCTCCATGTCCACCACCTGACACGTCCAGTCAATGTCCGTCCATTCATAGGCTGGACTCTTTGGGAGGGAAGTCCACGTTGGTCACCATGGTGACGACGGTGACAATCTCCTCGGGGGCGACGATGTTGGTCTGGCGTCGCATCTGGATGATGCGTTCCTCCACGCAGCCCGCCGAGAGCCGCGCCTCGGCCTCGTGGTCCCAGCACTCCTCGATGGTCTCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU671098 True 4240 lncRNA 0.43 4 24347560 24351991

Neighbor

gene id symbol gene type direction distance location
LOC110527541 LOC106575232 coding downstream 413550 23858508 ~ 23934010 (-)
LOC110528816 LOC106575230 coding downstream 794632 23392907 ~ 23552928 (-)
LOC118965272 NA coding downstream 1017944 23327046 ~ 23329616 (-)
LOC110527539 LOC106575227 coding downstream 1027003 23317589 ~ 23320557 (-)
LOC110527533 s100b coding downstream 1182854 23161894 ~ 23165209 (-)
LOC110527544 LOC106574304 coding upstream 46873 24394807 ~ 24447012 (-)
LOC110527545 LOC106575074 coding upstream 111097 24463088 ~ 24467224 (-)
LOC110527546 fstl1 coding upstream 115851 24467842 ~ 24492424 (-)
LOC110527104 NA coding upstream 167154 24519145 ~ 24527712 (-)
LOC110527547 LOC106575076 coding upstream 195031 24547022 ~ 24552025 (-)
G588414 NA non-coding downstream 44518 24302806 ~ 24303042 (-)
G588404 NA non-coding downstream 54563 24292769 ~ 24292997 (-)
G588265 NA non-coding downstream 65577 24281660 ~ 24281983 (-)
G588261 NA non-coding downstream 72024 24275230 ~ 24275536 (-)
G588191 NA non-coding downstream 104800 24161360 ~ 24242760 (-)
G588537 NA non-coding upstream 156017 24508008 ~ 24508388 (-)
G588559 NA non-coding upstream 172694 24524685 ~ 24524951 (-)
G588793 NA non-coding upstream 192551 24544542 ~ 24544764 (-)
G587242 NA other downstream 969859 23375012 ~ 23377701 (-)
G586878 NA other downstream 1260423 23084490 ~ 23087137 (-)
LOC110527529 ngl1 other downstream 1535057 22807676 ~ 22812906 (-)
LOC110527522 LOC106575212 other downstream 1727444 22609884 ~ 22620248 (-)
G588987 NA other upstream 476497 24828488 ~ 24828700 (-)
G589093 NA other upstream 619622 24971613 ~ 24979107 (-)
G589529 NA other upstream 849415 25201406 ~ 25278874 (-)
LOC110527565 LOC106575142 other upstream 896689 25215219 ~ 25290844 (-)
G589705 NA other upstream 1192744 25544735 ~ 25545418 (-)

Expression


Co-expression Network