G588368


Basic Information

Item Value
gene id G588368
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24461134 ~ 24462883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671013
aatttttttattgtattttttttaacgtATTTGGACACATGGATATTTGAGCTAAATTGCAACCAAATGAATTGATAAAGGTAACCCAATTTAACAACTCACACACAAAACATATTTGAAATTGTTATGcaattaaaataaacaaaaatacaatttcCTTCTGCAGAAATAATTTGTACCCCCCTGCCTTTACCATCACCTAAAATGGCTAAAATTAGGATCAGGTGCACCCAAACCGGTGACAATGATTAAGAAATCATTAGAGAGTACCTTGGGAGGGGCCAGCCTTCCATAAAGATTAGAAACTTGGTCTGGTTTGGTATTAAACATATCGGTGTGTGGTAACACATCATGCAAAGATCAAAATACCTATCTGAGGCCATCAGAATAAATATTATTCATGTCCTTGAGTCTGGGAGGGGTTACAAATACATTTCCAAGCAATTCAAAGTACATCATTTCACTGTCTGACAGTCTAAAAATTGAGAAAATTCCAGACCACTGGCAATCTACTTACGACAGGTCGTCCCACCAAATTCAGCCCAAGAGCTGACCGAAAGATGCTCATAGAAGTCTCTGAGAACCCCAGGGTAACATCAAGGGATCTACAGGCCTCTCTTGCCACAATCAATATTGAAGTGCATGAGTCAACTGTCAGaaagagacacaaacacaaactTGGCCTACATGGGTGGTCAGgaaggaagaagcctctgctctcAAAAAATTATATCAAGACAAGACTGACGTTTGACAGACAACACCTGGGTTAAAGACCAAGACTACTGGAACAATAAGCtctggacagatgagtcaaaggTAGAGTTGTTTGGCCGCAATGCCAGACGCCATCTTTGCCCGAAAAGAAACACTGCCTTTTGAACagaagaacctcataccaaccgtaaagcatggaggcgGTGTCATTATgatttggggctgctttgctgcctgaGGGCCAACTTTAACGCAGCCCGGACACAGAAATATAATAAAATGGAACAAAAACAATATCATGAAGTATTACACTTTACTATCATCATGCTAAATTCTTCACATTGGAATGATTATTGCCACAATTATTGCCCCGGGTATGAACAGCTAGatgcggctagatgttctttaccattcgtccatcagatttgccacaaaTGCTCttttataggacacatcactgcactctatactcttctgtaaactggtcatctctgtaaacCCGTCGCAAGACACACTGGTGGATGCTTAttcataaaaccctcttaggcctcacttccccctatctgagatatctactgcagccctcatcctcacaataaaacacccgttctgccagtcatattctgttaaaggtcccagagcacacacatccctgggtcgctcctcttttcagttcgctgcagttagcgactggaacgagctgcaacaaacactcaaactggacagttttatctcaatctcttcattcaaagactcattcATGGACACTATTGCTGACAAGTTGTGGCTGCTtggcgtgatgtattgttgtctctaccttcttgccctttgtgctgttgtcggtgcccaataatgtttgtaccctgttttgtgctgctaccatgatgtgctgctgccatgttgtgttgctaccatgctgtgttgtcatgtgttgctgccatgctatgctgTTGTTATAggcctctctttatgtagtgttgtcttgtctctcttgtcgtgatgtgtgttttgtcctataatgttatttgttttt

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU671013 True 1750 lncRNA 0.41 1 24461134 24462883

Neighbor

gene id symbol gene type direction distance location
LOC110527543 LOC106575235 coding upstream 85382 24358668 ~ 24426341 (+)
LOC110527542 LOC106574301 coding upstream 109133 24309838 ~ 24352001 (+)
LOC110527540 LOC106533352 coding upstream 840083 23609520 ~ 23621369 (+)
LOC110527538 LOC106575225 coding upstream 1143664 23306816 ~ 23317470 (+)
aox6 LOC106575224 coding upstream 1171320 23271803 ~ 23289814 (+)
gja5b LOC106574307 coding downstream 110523 24573406 ~ 24583614 (+)
setd4 setd4 coding downstream 260743 24723626 ~ 24732898 (+)
itsn1 LOC100286499 coding downstream 275314 24738197 ~ 24800444 (+)
LOC110527557 pknx1 coding downstream 348492 24811375 ~ 24820304 (+)
pdxkb LOC106574311 coding downstream 374401 24837284 ~ 24870911 (+)
G588365 NA non-coding upstream 863 24460060 ~ 24460271 (+)
G588364 NA non-coding upstream 2647 24458223 ~ 24458487 (+)
G588300 NA non-coding upstream 58082 24335435 ~ 24403052 (+)
G588263 NA non-coding upstream 181798 24278943 ~ 24279336 (+)
G588372 NA non-coding downstream 13313 24476196 ~ 24492509 (+)
G588538 NA non-coding downstream 45999 24508882 ~ 24509314 (+)
G588546 NA non-coding downstream 54104 24516987 ~ 24517435 (+)
G588565 NA non-coding downstream 66620 24529503 ~ 24529709 (+)
G588567 NA non-coding downstream 75803 24538686 ~ 24538940 (+)
G587660 NA other upstream 653134 23807722 ~ 23808000 (+)
G586685 NA other upstream 1446014 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 1757313 22684527 ~ 22722539 (+)
c7h10orf53 cssa17h10orf53 other upstream 2100907 22356500 ~ 22360232 (+)
G588755 NA other downstream 441448 24904331 ~ 24905581 (+)
G589734 NA other downstream 1140722 25587088 ~ 25608606 (+)
G589933 NA other downstream 1541047 26003930 ~ 26025309 (+)
G590936 gart other downstream 2089671 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 2114524 26577407 ~ 26577933 (+)

Expression


Co-expression Network