XLOC_025251 (mettl2a)


Basic Information

Item Value
gene id XLOC_025251
gene name mettl2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19665319 ~ 19682819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049862
GACGTCATGCAGAACAGCCATGTGCATCCGGTTCGCGTGTCCATCATGGCTGCTCCTGCTGTTGCTGCTGATTCTCCAGTCATAGAAAATATGCCAGAAACTGCCGGTGGGGCCACGGAAAATTCAGCTGAGGCCCAGAAACGACCGCAGTTTGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTGGGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGGAGTTTGACGACAGGGCCAATGAATACTGGAATGACTTTTACACCATTCACGAGAACCGCTTCTTCAAGGATCGTCACTGGCTCTTTACAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAGGTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAATGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAATCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAAGATGCAAAAGTCTATCAATAGATTGGGACGATTGCTGAAACCCGGAGGAGTGTTGTTATTGAGAGACTATGGCCGATATGACATGGCACAGCTACGTTTCAAAAAAGGGAGGTGCTTGTCTGAAAACTTCTATGTTCGAGGTGATGGAACCCGCGTCTACTTTTTCACACAAGATGAGCTGCATGATCTGTTCTCCAGTGCGGGTCTGGAGAAGCTGCAGAATTTGGTGGATCGACGATTGCAGGTGAACAGAGGAAAGCAGCTTACAATGTACAGAGTCTGGGTTCAGTGCAAGTATCGCAAGGTCCTGGCACCCACTTAACATCAAAACCGCTTGTTTGGAGAGAAGGAGAACATCTGGATTGCTGTACCATGACAAATCTGTGACGTAGTTTTACAGATGATGGACAGACTGCAGGAGCTTCAAGGTTACGGTGCTTATGTTTGCTCAAAGTGGTATCTGATGTATCCTGCTTGGGAATAAGAGGACAAGAGTTCCCATGATGCACCTGAGGGCTTTAAACTGTTTGTCCATCACATTGAGTGATGTTTTTTTAAGGACAATTTTTTAGTAGGAATAAACCAGATGAAATGAAGGCAAA
>TCONS_00049863
ATGTGCATCCGGTTCGCGTGTCCATCATGGCTGCTCCTGCTGTTGCTGCTGATTCTCCAGTCATAGAAAATATGCCAGAAACTGCCGGTGGGGCCACGGAAAATTCAGCTGAGGCCCAGAAACGACCGCAGTTTGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTGGGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAGGTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAATGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAAGTAAGTGACAGGAATTGAGCAATATGTGTCCTCGAATAATAACTGGTTGTCTTTATGCATGTTTtgatacattttagttttttggcAGTCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAAGATGCAAAAGTCTATCAATAGATTGGGACGATTGCTGAAACCCGGAGGAGTGTTGTTATTGAGAGACTATGGCCGATATGACATGGCACAGCTACGTTTCAAAAAAGGGAGGTGCTTGTCTGAAAACTTCTATGTTCGAGGTGATGGAACCCGCGTCTACTTTTTCACACAAGATGAGCTGCATGATCTGTTCTCCAGTGCGGGTCTGGAGAAGCTGCAGAATTTGGTGGATCGACGATTGCAGGTGAACAGAGGAAAGCAGCTTACAATGTACAGAGTCTGGGTTCAGTGCAAGTATCGCAAGGTCCTGGCACCCACTTAACATCAAAACCGCTTGTTTGGAGAGAAGGAGAACATCTGGATTGCTGTACCATGACAAATCTGTGACGTAGTTTTACAGATGATGGACAGACTGCAGGAGCTTCAAGGTTACGGTGCTTATGTTTGCTCAAAGTGGTATCTGATGTATCCTGCTTGGGAATAAGAGGACAAGAGTTCCCATGATGCACCTGAGGGCTTTAAACTGTTTGTCCATCACATTGAGTGATGTTTTTTTAAGGACAATTTTTTAGTAGGAATAAACCAGATGAAATG
>TCONS_00049864
GTGCATCCGGTTCGCGTGTCCATCATGGCTGCTCCTGCTGTTGCTGCTGATTCTCCAGTCATAGAAAATATGCCAGAAACTGCCGGTGGGGCCACGGAAAATTCAGCTGAGGCCCAGAAACGACCGCAGTTTGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTGGGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAGGTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAATGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAAGTAAGTGACAGGAATTGAGCAATATGTGTCCTCGAATAATAACTGGTTGTCTTTATGCATGTTTtgatacattttagttttttggcAGTCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAA

Function

symbol description
mettl2a Predicted to enable tRNA (cytosine-3-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to several human genes including METTL2A (methyltransferase 2A, methylcytidine).

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0016427 tRNA (cytosine) methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0052735 tRNA (cytosine-3-)-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-462 Predicted to enable tRNA (cytosine-3-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to several human genes including METTL2A (methyltransferase 2A, methylcytidine).

Ensembl:

ensembl_id ENSDARG00000008105

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049862 False 1387 mRNA 0.47 9 19665319 19682819
TCONS_00049863 False 1355 mRNA 0.46 8 19665338 19682811
TCONS_00049864 True 759 lncRNA 0.48 5 19665340 19677031

Neighbor

gene id symbol gene type direction distance location
XLOC_025250 itgb3a coding upstream 15784 19621034 ~ 19649535 (+)
XLOC_025249 rprml coding upstream 54329 19609638 ~ 19610990 (+)
XLOC_025247 CU571315.1 coding upstream 187846 19468777 ~ 19477473 (+)
XLOC_025248 NA coding upstream 192122 19472963 ~ 19473197 (+)
XLOC_025246 pde6ga coding upstream 199304 19460991 ~ 19466015 (+)
XLOC_025252 tlk2 coding downstream 3054 19685873 ~ 19717934 (+)
XLOC_025253 mrc2 coding downstream 49354 19732173 ~ 19813526 (+)
XLOC_025254 vat1 coding downstream 231513 19914332 ~ 19971774 (+)
XLOC_025255 asb16 coding downstream 318789 20001608 ~ 20011807 (+)
XLOC_025256 tmub2 coding downstream 330072 20012891 ~ 20021596 (+)
XLOC_025429 BX649540.1 misc downstream 10565920 30248739 ~ 30249036 (+)
XLOC_025243 BX322663.1 non-coding upstream 315502 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 352212 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 747736 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 772553 18892650 ~ 18892766 (+)
XLOC_025257 NA non-coding downstream 376859 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 515483 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 808383 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 997104 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 non-coding downstream 1230491 20913310 ~ 20915154 (+)

Expression


Co-expression Network