Gene
RNA
| Item | Value |
|---|---|
| gene id | G588979 |
| gene name | LOC106575085 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 24814698 ~ 24816030 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| homeobox protein PKNOX1-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU671684 | True | 626 | lncRNA | 0.53 | 3 | 24814698 | 24816030 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cryzl1 | LOC106575083 | coding | downstream | 76702 | 24732997 ~ 24737996 (-) |
| cbr1 | cbr1 | coding | downstream | 91075 | 24721469 ~ 24723623 (-) |
| LOC110527556 | LOC106575147 | coding | downstream | 103538 | 24709221 ~ 24711160 (-) |
| LOC110527549 | LOC106575079 | coding | downstream | 123090 | 24585450 ~ 24691608 (-) |
| LOC110527547 | LOC106575076 | coding | downstream | 262673 | 24547022 ~ 24552025 (-) |
| LOC110528817 | LOC106575139 | coding | upstream | 5165 | 24821195 ~ 24823487 (-) |
| LOC110527560 | LOC106575088 | coding | upstream | 99947 | 24915977 ~ 24965331 (-) |
| LOC110527562 | tm163 | coding | upstream | 305238 | 25121268 ~ 25164357 (-) |
| LOC110527565 | LOC106575142 | coding | upstream | 399189 | 25215219 ~ 25290844 (-) |
| fastkd2 | fastkd2 | coding | upstream | 511105 | 25327135 ~ 25337360 (-) |
| G588974 | NA | non-coding | downstream | 11836 | 24800110 ~ 24802862 (-) |
| G588965 | NA | non-coding | downstream | 26589 | 24782301 ~ 24788109 (-) |
| G588909 | NA | non-coding | downstream | 43549 | 24698930 ~ 24771149 (-) |
| G588944 | LOC100286499 | non-coding | downstream | 54176 | 24759222 ~ 24760522 (-) |
| G588905 | NA | non-coding | downstream | 120044 | 24694379 ~ 24694654 (-) |
| G588982 | NA | non-coding | upstream | 6274 | 24822304 ~ 24822560 (-) |
| G588983 | NA | non-coding | upstream | 6762 | 24822792 ~ 24823045 (-) |
| G588990 | NA | non-coding | upstream | 19097 | 24835127 ~ 24835417 (-) |
| G589016 | NA | non-coding | upstream | 51677 | 24867707 ~ 24869002 (-) |
| G589019 | NA | non-coding | upstream | 56317 | 24872347 ~ 24872644 (-) |
| G587242 | NA | other | downstream | 1436997 | 23375012 ~ 23377701 (-) |
| LOC110527533 | s100b | other | downstream | 1649489 | 23161894 ~ 23165209 (-) |
| G586878 | NA | other | downstream | 1727561 | 23084490 ~ 23087137 (-) |
| LOC110527529 | ngl1 | other | downstream | 2002195 | 22807676 ~ 22812906 (-) |
| LOC110527522 | LOC106575212 | other | downstream | 2194582 | 22609884 ~ 22620248 (-) |
| G588987 | NA | other | upstream | 12458 | 24828488 ~ 24828700 (-) |
| G589093 | NA | other | upstream | 155583 | 24971613 ~ 24979107 (-) |
| G589529 | NA | other | upstream | 385376 | 25201406 ~ 25278874 (-) |
| G589705 | NA | other | upstream | 728705 | 25544735 ~ 25545418 (-) |
