G588716


Basic Information

Item Value
gene id G588716
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24830088 ~ 24830298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671399
tctccctgtacaccaagtcagaatcgtatgataaataaagggggcatttaagcagacaatgaaagctcttacaatatttgatgaggACATTTctataaaacaggctataggctacatgtgcaccaccaagtcagaacagtaggttaagttatgagggggaagtcccaaattattagggtgaggcacatgggctactaacagcatACTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU671399 True 211 lncRNA 0.41 1 24830088 24830298

Neighbor

gene id symbol gene type direction distance location
LOC110527557 pknx1 coding upstream 9784 24811375 ~ 24820304 (+)
itsn1 LOC100286499 coding upstream 29644 24738197 ~ 24800444 (+)
setd4 setd4 coding upstream 97190 24723626 ~ 24732898 (+)
gja5b LOC106574307 coding upstream 246474 24573406 ~ 24583614 (+)
LOC110527543 LOC106575235 coding upstream 454336 24358668 ~ 24426341 (+)
pdxkb LOC106574311 coding downstream 6986 24837284 ~ 24870911 (+)
LOC110527559 plcc coding downstream 42123 24872421 ~ 24902570 (+)
LOC110527561 LOC106575089 coding downstream 167624 24997922 ~ 25115994 (+)
LOC110527563 alg11 coding downstream 368868 25199166 ~ 25278853 (+)
spp2 spp2 coding downstream 372822 25203120 ~ 25213611 (+)
G588687 NA non-coding upstream 27221 24800584 ~ 24802867 (+)
G588622 cbr1 non-coding upstream 106981 24694821 ~ 24723107 (+)
G588676 NA non-coding upstream 119024 24710319 ~ 24711064 (+)
G588665 NA non-coding upstream 136213 24693590 ~ 24693875 (+)
G588664 NA non-coding upstream 138522 24691356 ~ 24691566 (+)
G588717 NA non-coding downstream 2457 24832755 ~ 24833011 (+)
G588720 NA non-coding downstream 5300 24835598 ~ 24835868 (+)
G588764 NA non-coding downstream 91979 24922277 ~ 24922579 (+)
G588765 NA non-coding downstream 93351 24923649 ~ 24924230 (+)
G588766 NA non-coding downstream 95633 24925931 ~ 24926133 (+)
G587660 NA other upstream 1022088 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1208719 23609520 ~ 23621369 (+)
G586685 NA other upstream 1814968 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2126267 22684527 ~ 22722539 (+)
c7h10orf53 cssa17h10orf53 other upstream 2469861 22356500 ~ 22360232 (+)
G588755 NA other downstream 74033 24904331 ~ 24905581 (+)
G589734 NA other downstream 773307 25587088 ~ 25608606 (+)
G589933 NA other downstream 1173632 26003930 ~ 26025309 (+)
G590936 gart other downstream 1722256 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1747109 26577407 ~ 26577933 (+)

Expression


Co-expression Network