G589016


Basic Information

Item Value
gene id G589016
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24867707 ~ 24869002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671721
ttacatacatgtacatactctcacatacacacacacatgtacagtaacGCACAATTGGAACATAGATTAAACAGTTCACTGATTTCATGAAAAGCTGAGGAGTAAGTACATGTCAGTCAGAGCAGAACTAACCACTGATTGGTCCTGCACACGGACACTCCCCCGCCTGAGGAGAAATGGTTGTAACATAGCATCACCAGAAAGATCAAATCAGCTTTCTCCACATTGTTCATTCTTCAGAACAGAGCGTAAAATATGGAGAATTCCCCACAAAGCAGGGGAAGACAGAAAACTTACAGCAAGTTGGCTAAATAACAGGAATCATATTAACTTTATTGCAATTTCATGTCTGTTTCAGGAAACAGCCAGTTTGGCACTCTCTAACATAATTTGATTTCACAAGTTTGGTACAGACAGAGAAACCATATCAATATTATATCTGCCCAAGATATGTAAATATACAAACACATAAAAAAGTATATGAATGTTTTGCTTAATTTGTATGTATAAAATGAACAGTGTAGATTATCCTTGCTAGTCCTTGCAACCAATTAAGAACAAAATAAAAGACATACGCATGGTAATTCCAATAACATTGAAATTTGAACACACACGGATCATACATCAACAAATGTTGAAATGATAGATCTCCAGCATTTCACACATTGTAAATAACAAACAACACACAAAAACGTACAACCACAAAGTTAGTGACGTGCTTACAATGATCATACGCTGATCATGATCTAAGCACCGAACATGGACAATTGATTTAAGAATCAACATACCCAAAACCATTGTCCTGTTGTGACATATGAGGTAAAACGTTTATAAACCACCACTCCTCCACTCAAATAAGTGCCTCAGAGTCTATCCTATCCCTGATCAGTATTCTGCCCTCAGCTGTGCATATATTTCACAAGGCTTGATTGATTGACAGATTGTTGATTGGTTGATTTTTGTAGGCCAGATATAACCTCGGCCTAGGCTTTAGCTAGCCTGAGCCACCACATTGCCACCGTAGTTAGCTAGTGCTGCAACTCCAATAGGCCTAAGCCCTGTGATGCCTGGCCTTGGAATAGTCTAGGCCTGGGCTGGCCTGTGCTGTGAAGATGTGTGTGCAGGACAAACCAAGAGGTTAGGCAAGCTcaaagagggagtgggagagataaagagagaccgagagagaccagGTTGTCGAAAAGAGGTGTCTGAGTGCAGTAGCCCCCACCCCGGCCCACTCAGGTCTTCCCCTCCTCTGCTCACCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU671721 True 1270 lncRNA 0.41 2 24867707 24869002

Neighbor

gene id symbol gene type direction distance location
LOC110528817 LOC106575139 coding downstream 44220 24821195 ~ 24823487 (-)
cryzl1 LOC106575083 coding downstream 129711 24732997 ~ 24737996 (-)
cbr1 cbr1 coding downstream 144084 24721469 ~ 24723623 (-)
LOC110527556 LOC106575147 coding downstream 156547 24709221 ~ 24711160 (-)
LOC110527549 LOC106575079 coding downstream 176099 24585450 ~ 24691608 (-)
LOC110527560 LOC106575088 coding upstream 46975 24915977 ~ 24965331 (-)
LOC110527562 tm163 coding upstream 252266 25121268 ~ 25164357 (-)
LOC110527565 LOC106575142 coding upstream 346217 25215219 ~ 25290844 (-)
fastkd2 fastkd2 coding upstream 458133 25327135 ~ 25337360 (-)
retreg2 LOC100380703 coding upstream 477394 25346396 ~ 25358486 (-)
G588990 NA non-coding downstream 32290 24835127 ~ 24835417 (-)
G588983 NA non-coding downstream 44662 24822792 ~ 24823045 (-)
G588982 NA non-coding downstream 45147 24822304 ~ 24822560 (-)
G588979 LOC106575085 non-coding downstream 51677 24814698 ~ 24816030 (-)
G588974 NA non-coding downstream 64845 24800110 ~ 24802862 (-)
G589019 NA non-coding upstream 3345 24872347 ~ 24872644 (-)
G589021 NA non-coding upstream 6364 24875366 ~ 24875823 (-)
G589022 NA non-coding upstream 6941 24875943 ~ 24876161 (-)
G589025 NA non-coding upstream 11636 24880638 ~ 24881011 (-)
G589029 NA non-coding upstream 16446 24885448 ~ 24893380 (-)
G588987 NA other downstream 39007 24828488 ~ 24828700 (-)
G587242 NA other downstream 1490006 23375012 ~ 23377701 (-)
LOC110527533 s100b other downstream 1702498 23161894 ~ 23165209 (-)
G586878 NA other downstream 1780570 23084490 ~ 23087137 (-)
LOC110527529 ngl1 other downstream 2055204 22807676 ~ 22812906 (-)
G589093 NA other upstream 102611 24971613 ~ 24979107 (-)
G589529 NA other upstream 332404 25201406 ~ 25278874 (-)
G589705 NA other upstream 675733 25544735 ~ 25545418 (-)
G590443 NA other upstream 1288991 26157993 ~ 26158305 (-)

Expression


Co-expression Network