G589105


Basic Information

Item Value
gene id G589105
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24988010 ~ 24988480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671819
ggccaagcacaggaagcagctctttcagtagtttagttggaatagggtccattaggcagctggaaggtttagaggccatgactatttttcTGAATGTGTTGAGAGATACAGGTTTTAAAAAAACGTGAATTATGAATTCCTCACTGCTGAAATGAAGGCCATCCTCACTTTTTAGTTcgctttgtgacagtatcaaaaatacatttttggattGTTTTTACTCTCTtcaattaggttggaaaaataGACTGACCGAACAGCATTGAGGGCGCTTCAATATtgcatggtactgtctttccaagctaattGGAACatttccagtttggtggagcgcCATTTCCTTTCCAATTGTTCTGGAAGCGTGCTTCAGGGCTCGAGTATtgtctgtataccagggagctaatttCTTGTCAAATGCTTTTTGTTTTGAGGTACGACTGCGTCTATGGTATTAGGTAAAATTTAGATCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU671819 True 471 lncRNA 0.40 1 24988010 24988480

Neighbor

gene id symbol gene type direction distance location
LOC110527559 plcc coding upstream 85440 24872421 ~ 24902570 (+)
pdxkb LOC106574311 coding upstream 117099 24837284 ~ 24870911 (+)
LOC110527557 pknx1 coding upstream 167706 24811375 ~ 24820304 (+)
itsn1 LOC100286499 coding upstream 187566 24738197 ~ 24800444 (+)
setd4 setd4 coding upstream 255112 24723626 ~ 24732898 (+)
LOC110527561 LOC106575089 coding downstream 9442 24997922 ~ 25115994 (+)
LOC110527563 alg11 coding downstream 210686 25199166 ~ 25278853 (+)
spp2 spp2 coding downstream 214640 25203120 ~ 25213611 (+)
LOC110527567 LOC106575093 coding downstream 313320 25301800 ~ 25312514 (+)
LOC100136274 LOC100136274 coding downstream 326720 25315200 ~ 25321925 (+)
G589081 NA non-coding upstream 19632 24968173 ~ 24968378 (+)
G588766 NA non-coding upstream 61877 24925931 ~ 24926133 (+)
G588765 NA non-coding upstream 63780 24923649 ~ 24924230 (+)
G588764 NA non-coding upstream 65431 24922277 ~ 24922579 (+)
G588720 NA non-coding upstream 152142 24835598 ~ 24835868 (+)
G589146 NA non-coding downstream 74631 25063111 ~ 25080006 (+)
G589207 NA non-coding downstream 178426 25166906 ~ 25169031 (+)
G589211 NA non-coding downstream 185960 25174440 ~ 25174835 (+)
G589214 NA non-coding downstream 187957 25176437 ~ 25196803 (+)
G589220 NA non-coding downstream 199879 25188359 ~ 25194730 (+)
G588755 NA other upstream 82429 24904331 ~ 24905581 (+)
G587660 NA other upstream 1180010 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1366641 23609520 ~ 23621369 (+)
G586685 NA other upstream 1972890 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2284189 22684527 ~ 22722539 (+)
G589734 NA other downstream 615125 25587088 ~ 25608606 (+)
G589933 NA other downstream 1015450 26003930 ~ 26025309 (+)
G590936 gart other downstream 1564074 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1588927 26577407 ~ 26577933 (+)
G592134 NA other downstream 2494570 27483050 ~ 27483796 (+)

Expression


Co-expression Network