XLOC_025257


Basic Information

Item Value
gene id XLOC_025257
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20059678 ~ 20064732 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052637
GACAGCTTTTAAAATCTTTtcaaaagaatattttttaaaaatcctcaTATATAGTCGAATTCCAAGAATCAGGAATTGCTGCCTAAAGAGAGGAATTAAAATCCAGCCCGACACATAATGGTTGATGTTCATTACACCAGCCCTAAGAGTTTACACTCATTGTAGGGAATCACTcgagtaaaaaaaactaaaactaatgaattGTGACAAACATCTGAGAAAAAAAGTAAAGCCCACATAGTTATCACTTTTTTCGTgaaattaataaaggaacaagAACACTTCAATTGTTGGTCCTGACTTTCCATTTAACCCAATCTAaacaagtgtatgggtgttttgtttgtctgtttttaaacCACTCAAAGCTTCtatggctattttcatggcatGAAAATGCAtgcagcatttaaaaataaaacttttatatttgattatctGTAAGGTTGTATTTGCTTTAACAGCCTTTGAAATCTTTTCAAacgaattacaaaaaaaatcctcatatatatttttgttgaattCCCTAAATCAGGAATTGCTGCCTAAAGAGAAGAATTAAAATCCAGCCCCACACATAATGTTGATGTTCATTACACCAGCCCATTTATGTTCATTGTAGAGAATCAGtcttgagaaaaaaataataataatcatgactAAAAAATCTGAGACAAAatttaagttttcacttttttttcaatgctgtttttcaagtgtttgtttgtgttcaacaccATTTAAGGTTCAATAGCTATTTTAAAAGTGAGAACATGTGCATTATGGTCAAATGTTGCATGTTTGATGGTCACTACACCACCCCTAAGTGTTTACACTCATTGTAGGGAATCACTCgaggaaaaaactaaaactaatgaattGTGACAAACATCTGAGAAAAAAAGTAAAGCCCACATAGTTATCACTTTTTTTCGTgaaattaataaagaaacaagAACACTTCAATTGTTGGGCCTGACTTTCTATTTAACCCACTCTAaacaagtgtatgggtgttatgtttgtctgtttttaaacCATCAAAGCTTCTATGGCTATTTTCATGGTGTGAAAATGCATGCagcagttaaaaataaaacttttatatttGGTTATCTGTAAGGCTGTATTTGCTTTAACGGCGTTTAAAATCTTTtcaaaagaatatttaaaaaaaatcctcatATATAGTCGAATCCCAAGAATCAGGAATTGCTGCCTAAAGAGAGGAATTAAAATCCAGCCCGACACATAATGGTTGATGTTCATTACACCACCCCTAAGTGTTTACACTCATTCTAGGGAATCACTcgagtaaaaaaactaaaactaatgaattGTGACAAACATCTGAGACAAAAAAAGTGAAGCCCACATAGTTATCACTTTTTTTCGTgaaattaataaagaaacaagAACACTTCAACTGTTGGTCCTGACTTTCTATTTAACCTAAACAAGTATATGGgtgttttgtttgtctgtttttaaacCATCAAAGCTTCTATGGCTTTTTTCATGGCGTGAAAATGCATGCagcagttaaaaataaaacttttatatttGGTTATCTCTATCTCTCTAAGGCTGTATTTGCTTTAACGGCGTTTAAAATCTTTTCAAacgaatatttttaaaaaatcctcatttatagtCGAATTCCCCGAATCAGGAATTGCTGCCTAAAGAGAGGAATTAAAATCCAGCCCGACACATAATGGTTGATGTTCATTACACCGCCCCTAAGCGTTTACGCTCCATCGTGAGACAGAGCCCATTGCTTGTGACGGTTTCAAATCTCAAATAACTCTGCAGTCGACACCAGCAAGAGCAGCCAATCCGTCTAATCTTCCATTTTGTCTACTGAACTAAGACTTAAAACGGCATCTCCAGCGCTCGACTCGCGTTTTTTGGCACGAGCCTTTCGTTGCGGAGCCTCAAAAATGGAGTATATTTTCGGCGGACGAGTGGATACTGGGAGGTACTACAGGACAGGAGGAGGAAGGAGCGTTTCGGGCGATAGGCAGGCAGCTGCCTCTACACGGACCAGCTGACCACGGATCGGGATCTGCTTTCGGTGTTCGTCGAGAGGGGGAAACACAGCTAGGGATGGATCATCATCATGAGTGACTGATTCAGCATGCAGCACCAGCGTCTGCCTCCACACGGGACAGGGCGCGGGGCTTCGCTTCCGCCGCGGACGCGCTCTGGGTCAGCCTCATTGCGACAGTATTAAAAACGCTCGACTGTTTTGGAGGGCTCGTCCTAATCTGATGCGGTTTAGCAAATGTGTGCACTGACTGAATTAGTCACAAAATGGCACGAGGCTTTTTCCAGGGCGAGGCGTCGCAGCTGCGCTGAATGTGTGTAATGGCGGCGCGTGAGCCAGCTCAGTCCAGCTTTAAAATAGACCCTGACTGAAGGGCATTTCTTACCATACTGAAATGCTCCCCAGGCAGCCGGGTGGCATTGCTTTGTGACCCTGTTCAAGCAGAATTGAGTTTTACAATCACAAAAATGTCCAGAAAAGCTGGTTGATTTAATAAGATTTTTAAAGAACAAAAGCTTTGGTAACGGAGCTCCAGGTTCAAGGAAAATACGTCAAAGTTAGTCTTTAAGTATTTATAAGGGTTCATTTAAAATTCATGtttcatacatttaattcggTTTCGGATATTACAAACACGTTTCTAAATCATACAATTAAtgctgtttaatgtttaaaacagTTTAGCTTATTTATCCAAGTGAAAACCTTAATAAATGGATTCATCATGTCCACAAACGATAGCTTTCAATCAATTATcttttaataaagttaaaatgtTACACTATTAAACCGACCTACGACTTGACCTACACCGGAGCTAGCTGGCTAGAATTAGCATTGAATCCCCCTCCAGCCAGTCTCTCTGGTGAGAGCTGAACCAGCTCCCGTTAAAGAAATCATCCAgaaattatgtttaattaaacCCAAAAAGCCATTGTTATTTAGTTAATGCTAAAAATTATTTCCAAAGTGTCCTCTTACCGTAAAGAAATCTGGTTTTTACCCCGACTTTTCGAGTGTCGAGGATAGCGGGGTGAAAGCACGGTGTGTGCAGCCGTATGGTAGCAGTCTCTTCAAAGGCTTGAAAAAcagaaatgaaagaaataaactgTTAATGTAAATCAATACTCGGCGATTAAAGCACAATTAAAACAAACGAAATCATCTCGGCGAGAAGCGACTCAATCCCGTGTGCAAACGTGTAATTTTGTTCGTGGTCACAATGGAAAAACGCAACAGCCGAGAGAGAGGACGCTTGACTGGCGTGACGACTGTTCTAGAGCCGCCATACTATCCTCCATGCACGCTGCAAGCCCAAATCAACCCCAACGACAAAAAAACGACCACAAATCACCCATAACTTACCCGGTTCGCTCCTCAAGCACAGATAACCGAGGAAAACGATCAAATATGATCGCGAGCTATGATTTCACGGTAAGCACAAGCGAAAACAAGCCCACACGGTGAGACAACCAAGCTCCCTGATGGCGAACCAGAGGCGGCTGGTTCTTCCCTCCACGAGCCTCATGGAGTCCTGACTCGGAAATGAAGACGACCGCGCGGATTACTTCCAAACACGACAAAGATGCACGTTTTGCGCGTTAAAACGAGGTTAACGGCTTGTGGAGTTAAACTCGAAAATTAACGGTTCTGGTATTTAAAGCGGAGGATGTTTTTCCCCGAGTCACAGGACGGGAAATTCGGGTAAGGCGACCTCGGAATGTACCGTGCCTTGCACCGAGTCAACGCGAATTTAAACAAAAACCCCATCAGTGAGCTaaagtttaaatgtttatatttgcttttgatgttgtttttcttCTCAATGTTTGTTTACCCAACGGTTGGTAGGATGAGGCGCTGGTTAGACCTTACCTGTCGCTGCTTGTGTGTGGAACTGGTGCTGGAACAAGGGGAGGGTTGAATGTTAGCCAGCACTGCGCCGCCGGTCCAGGGCACGGGCGCTCCAGTCCCCGCAGAGCTGAGAGACTTCCCCCCGCCTCCATCTCTCTCGCTCTCCTTCCAGTCAACGCGCAGCTCTCTCGATCCGCTCATTTCTCTTTCCAAAGAGACATCCGCATTTTCAATCTCTCCCCTGCTCGCCGCTCTCATCACGGACGGCTCGCCCGTTTCGCCTCCATTCGGCATTATAAACACGGAGCTACCGAGGCGCCATCAAACCCAGTGGTGCGCGCGTGTTGCACTTCGGACTTGTTTTGAACACATTTTTCTCTTGATTGATCATGCATATTTCaataaactttattaaatatGCTTGCATTGTGTTTTGTGATGACTATTATCATTATAAGACACATTTAGTCAAGCAGGTTGCTTTCCCAGAGCGCGTGCACGGTGTGAAAGAAGAGTGAACTGTTGTGTACATTAAACatcttttcagcattttcagtcTGACAGCTTCATCTTTTTTGTCACGTTAAATAATTAAACCCCACCTTGTCTGTTTGTGGGCGTCACCTGAAATGTCCAATCAAGACGTTgtgatttggtaaaaacatgatTTTCCAATGGGCGCGCGGATTCGTTAAACATCAGAGCGGTGACGTGCGCACTTCATCGGAATGAACGCCTCAGTCCCACGCCGGTGCCTCGGGGAACCGAATACAGGCCGGTGGAACAGCTCAAACCTTGTATAACAGTTGTCAACTTTTGAAGTAgatcaaaataaatgttcaaaattaTTCCAAGACAAAACTGGGGGTAACTGATGAGATTTAGGACAACTTTAAAGATCTTTAATGTTCACCTCTGTAGTTTCCAGTGTGAGCTGTAATGCTAACTCTTGAAatcatttaacatgtttaatttttttgtgcacTATTGAGATTCACGTATACATACTAACTAGTAGGCTGTATTGAAGTATTTACAATTATTATCCACCCCAAAAACACTTATATGCATAGATTGGTGTCTTTTATAGTTAAAGTTTATTGACGTATAGAATGTAATCGTTTAATGACAAGACAacttgttaatatatt
>TCONS_00049871
agtttaaatgtttatatttgcttttgatgttgtttttcttCTCAATGTTTGTTTACCCAACGGTTGGTAGGATGAGGCGCTGGTTAGACCTTACCTGTCGCTGCTTGTGTGTGGAACTGGTGCTGGAACAAGGGGAGGGTTGAATGTTAGCCAGCACTGCGCCGCCGGTCCAGGGCACGGGCGCTCCAGTCCCCGCAGAGCTGAGAGACTTCCCCCCGCCTCCATCTCTCTCGCTCTCCTTCCAGTCAACGCGCAGCTCTCTCGATCCGCTCATTTCTCTTTCCAAAGAGACATCCGCATTTTCAATCTCTCCCCTGCTCGCCGCTCTCATCACGGACGGCTCGCCCGTTTCGCCTCCATTCGGCATTATAAACACGGAGCTACCGAGGCGCCATCAAACCCAGTGGTGCGCGCGTGTTGCACTTCGGACTTGTTTTGAACACATTTTTCTCTTGATTGATCATGCATATTTCaataaactttattaaatatGCTTGCATTGTGTTTTGTGATGACTATTATCATTATAAGACACATTTAGTCAAGCAGGTTGCTTTCCCAGAGCGCGTGCACGGTGTGAAAGAAGAGTGAACTGTTGTGTACATTAAACatcttttcagca

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000102428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052637 False 5055 lncRNA 0.41 1 20059678 20064732
TCONS_00049871 True 622 lncRNA 0.49 1 20063509 20064130

Neighbor

gene id symbol gene type direction distance location
XLOC_025256 tmub2 coding upstream 38082 20012891 ~ 20021596 (+)
XLOC_025255 asb16 coding upstream 47871 20001608 ~ 20011807 (+)
XLOC_025254 vat1 coding upstream 87904 19914332 ~ 19971774 (+)
XLOC_025253 mrc2 coding upstream 246152 19732173 ~ 19813526 (+)
XLOC_025252 tlk2 coding upstream 341744 19685873 ~ 19717934 (+)
XLOC_025258 ngfra coding downstream 92224 20156956 ~ 20231781 (+)
XLOC_025259 NA coding downstream 133570 20198302 ~ 20198619 (+)
XLOC_025260 nxph3 coding downstream 340180 20404912 ~ 20461702 (+)
XLOC_025261 NA coding downstream 426470 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 coding downstream 615191 20679923 ~ 20680038 (+)
XLOC_025429 BX649540.1 misc downstream 10184007 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 586481 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 709861 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 746571 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 1142095 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 1166912 18892650 ~ 18892766 (+)
XLOC_025263 BX936284.1 non-coding downstream 848578 20913310 ~ 20915154 (+)
XLOC_025264 zwi non-coding downstream 960421 21025153 ~ 21030873 (+)

Expression


Co-expression Network