G589558


Basic Information

Item Value
gene id G589558
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25199142 ~ 25200889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU672337
AAGTGTTCGTTCCACATGGTGTGAAGTCCCACCGTAGCTTCCCCCAACTCCCTCTTCAGCTCCTCAAACGGCACGTTGAGTTTAAATCAACACCCTATCCTCATCCTCTTGGTTCCGGCATCCACCAATCAGCACCAACCTCAGCGACTCCCTTCCTTTTCAGCCAACTTCTCTGCCTAACATGGTCATGCCATTGTTAATCATGCCATTGTTAACATTGACAATAATAGTCAGAGAGGCATTGGCTAAAGCACATTCAGATATAGACCTGGCTATATTCCCCTAGTTAAGACTGTGTCTCAGGCGGCCGGGGGTCTGTAGTGGGAAACAGGGTTCTGAGACGATTACCTACCTGCGGTTCCTCTCACGCACCACCGACAGCATGTCTGTGCTGATGGTGGGGTAGTGCACGTAGCCAGCCACGTGACAAACCCCTAGGTATTTAAGCACAGGCAGAGTGAAGGCGTAACCCATGGAGTCGATGTAGACACCTGGGACAAACTCCGTAAGGGCTTCCAAGCCAAGGAAGATTGAGCCTACACTCTGACCAATCAGAGTGAATTGGGGGGAAGAGGCTGGCCTCGACCAATAGGTGGTGTTTGAGGAAGACAAACTGGACGGGTCGAGGTAGAAGGATGTTGAAGCGCCATCAAAAATCTGCtgatctgtcacaccctggtcgcGAAAATGTTACACAAAGGGGAAACTAAAATGGCCGTTCCAATCCGTTTTCTTCTCTTTGGTGCCTAATCAACACGGCAACAAATTACTGTTGGATATGGGTTTTTTCATACCATGTCAACATTCTAATCAACATAATGCTTGACAGATGGGTAGCAAGCTGAGATTCGGTAGATAAGCCCCCAAAGTAACTTCTTCATGCTGAATGCACTGAGCAATCTGTAGTACGATCCTATAGCTAGGAATATTatcattaagcaataaggcccgaaggggtgtggtatatggccagagCCATATATGAGCTATAGCAGCTCTATTCATGACATTTCTACCTGCAACGTTACTACTGAACAAGGCCCAGGAACCCTGTCAAAACAGATGATCAATACTACAAGCTAGCTTTCGAAAAAACCTTCTCTGTACGTGGGGGTTTTCAGCGGTTATATTCGCCCACCATTGGCCCCATGTGAACTACAATACCGACGCTGTGTTTTAACGTTAAAAACGTAAATAATCATGGCTTTTCGAAACATATGCGGACATACCCAATTGAGGATAGGCATATAGGCAAAATTCAGCAATGAATCATATAACAGTTACAAAGTTTAAAACACCTTCATGTCCTCCATTCGATCCCACTATGTACTAGATTGGCTACCAGCCACCTAGAAACTTAAAACCCTCATGTCAAAAGAGAACAACAGCTCATTTAAAAACAGAATAAAAGAAAATGGTGTGAAATTTAAGTCCCCCTTTTACTCATTATCCTTTATTTCAGCGGTCCCAACATAGTAATA

Function

NR:

description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU672337 True 1481 lncRNA 0.45 2 25199142 25200889

Neighbor

gene id symbol gene type direction distance location
LOC110527562 tm163 coding downstream 34785 25121268 ~ 25164357 (-)
LOC110527560 LOC106575088 coding downstream 233811 24915977 ~ 24965331 (-)
LOC110528817 LOC106575139 coding downstream 375655 24821195 ~ 24823487 (-)
cryzl1 LOC106575083 coding downstream 461146 24732997 ~ 24737996 (-)
cbr1 cbr1 coding downstream 475519 24721469 ~ 24723623 (-)
LOC110527565 LOC106575142 coding upstream 14330 25215219 ~ 25290844 (-)
fastkd2 fastkd2 coding upstream 126246 25327135 ~ 25337360 (-)
retreg2 LOC100380703 coding upstream 145507 25346396 ~ 25358486 (-)
LOC110528818 NA coding upstream 158018 25358907 ~ 25361270 (-)
cnppd1 LOC106575101 coding upstream 162552 25363441 ~ 25371970 (-)
G589556 NA non-coding downstream 893 25197927 ~ 25198249 (-)
G589530 NA non-coding downstream 6674 25188735 ~ 25192468 (-)
G589543 NA non-coding downstream 25514 25173388 ~ 25173628 (-)
G589499 NA non-coding downstream 101242 25096410 ~ 25097900 (-)
G589525 NA non-coding upstream 2230 25203119 ~ 25214524 (-)
G589590 NA non-coding upstream 100565 25301454 ~ 25315300 (-)
G589575 NA non-coding upstream 124396 25325285 ~ 25326280 (-)
G589631 NA non-coding upstream 205822 25406711 ~ 25407033 (-)
G589639 NA non-coding upstream 213117 25414006 ~ 25414225 (-)
G589093 NA other downstream 220035 24971613 ~ 24979107 (-)
G588987 NA other downstream 370442 24828488 ~ 24828700 (-)
G587242 NA other downstream 1821441 23375012 ~ 23377701 (-)
LOC110527533 s100b other downstream 2033933 23161894 ~ 23165209 (-)
G586878 NA other downstream 2112005 23084490 ~ 23087137 (-)
G589529 NA other upstream 517 25201406 ~ 25278874 (-)
G589705 NA other upstream 343846 25544735 ~ 25545418 (-)
G590443 NA other upstream 957104 26157993 ~ 26158305 (-)
LOC110527590 LOC106575121 other upstream 1377280 26575613 ~ 26585525 (-)

Expression


Co-expression Network