XLOC_025258 (ngfra)


Basic Information

Item Value
gene id XLOC_025258
gene name ngfra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20156956 ~ 20231781 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049872
TCTTGTGCCCCCCTCATCTCTGCGTGCACGACTCTCTCCTCCGCAGTGCACTGCTGGACAGCGCTGAGCGCGGAGTACAGGACAGTAGGCTACAGGACAGTAGCGCGCATCAGCGGGTGGCACGCGCTTCCGTATAGTCCTAAAGTCCCAAACAGCAGCAGCGCACAAGAGGAGCGCCCTCATGGAGCTAATATGAACTATCCGATGGCTGAGCTTCACTTCACAACCCACACTGACACATTTACAGTTTGAGAGGGAAGGGAAGGCACGCGTCAGACATGGACACCTCGCTGTGGATCGTGATTTGTGCAGCGCTGGGGCTGGTGTCAAGCTCGAAGCTGGAGCTGGCGGTGGAAGAGGAGTGTGAGTCGGGCAGCTTCACCCACAGCGGCGAGTGCTGTGTGCAGTGTCCTCCAGGAGAGGGAGTGATCAAGGAGTGTGGAGCCACCCAGACTGAGTGCACTCAGTGCCTTGATAGTGAGACGTTCTCTGCCACGTTCAGTCACACAGACAAATGCCAGGTGTGTACTGAGTGCACAGGCCTCATGAGAATGCAGACGCCCTGCACTGACTCCAATGACGCCGAGTGCGTGTGCAACTATGGCTACTTCATGAACGTGTTGAGCAGCCGCTGCGAGCCCTGCACTGTGTGTCCACTGGGTCAGGGTGTGGATATGCGCTGCGAACTGAACCACGACACAGTGTGTGAGGAGTGTCGGGATGAAACCTACTCTGATCAAGAGAACACGATGGACCCCTGCATGCCCTGCACAATCTGCGAAGAGGATACAGAGATACTGCTCAGAAACTGCACACCAACTGAAGATGCACTGTGTCACGATCCACTGAGTCCCACCTATCCCACTTCCACGGGTGATTCTGGTTCATTTGACACTGATTTAGATCGTCTGTGGAGCCCTAGCCCTGGAGATGATGCCACCACACCCAAACCCAGCTCCCCTCACTTCATTGGCAGAGGGCTAAATGAGAACCTGATCCCCATCTACTGTTCTATCCTGGCTGCAGTTGTGGTCGGCCTCCTGGCGTACATCATTTTCAAAAGGTGGAACAGCTGCAAGCAGAATAAACAGGCAGCTAACAATCGCGCAGCCACAGCCAATCAGACACCATCTCCAGAAGGGGAGAAGCTGCACAGTGACAGCGGCATCTCAGTGGACAGTCAGAGTCTGCAGGAGCAGCAGGCGCAGACACAGACGCAGGCACAAGCGCAGGCCCACACACAGCTTCATGCAGCAGAGCAGATCGTGGTGAGAGTGGACGGAGCGACTCAGCCTGACTCTCCTCCAGCTCAGGCCTAACCAGCGAGGAAGAGGAAGCTACGTTATCAATATATCAATAGAGAGAGGAAGAAAGTTAGACTGGAGAGGAGAAAGCAAGCAGAATGAGGAGAATGGAGAAGTTAAAGCCATGACGGCCAACCGGCGAGGTACGCCGAGACTTAAGTGACCAAACCTTTGATCCTGTTGAACCCAGCTTGGACAATTCATTGATGAGCAGATTCAACAGCACCAATGGATCCACAGCGATCTTCAGACTCACTGGCCTAAAGTAGCAACATCTAAATAAACATATGCCTATTACTCTGAAGACCATGATGTATACGAGACCCACCACAAACTCTGATGAATGTTTTACACATACTCTCAGATGTAGTAACGTGTCCTTGTGACACAAACTCTGGATGCTTCACTAAAGGAAGTAAAAAGACGTCTATTTAAGGCTTGGTGGATATCTCAAAGTTTAGCAGCCGCACTGTGGTTCCTCAACCTGGACTGATCTAATAAGGATTTAGTTTTTTGCCTTATCTTTgaagtattaatacattttttgtctATAGCATCAAGGCCCTTTATTTAATCTGAATTGTAGCCGTTTTCAGCCCTGCGGGATTGTATGCATTTAACAAGACTATCGGTCACCATCTAGTTTCTCAAAGCGACTGATCAGCGCAGGTCAGTGTTTATAGGCAACAGCAACGCACGACTGTGACATTTGCTGACCTTTGCTAATGTAATGACTCAGATCTATACTTAGCTAGCCGTCTCTTTTCTCTCTTTCACACTCTCTGACAGCTATTTCTCtataaaagacacacacacaaagcgtGTCACATTCCCTGCCTTCCTCTAGTCATCACAGATTAGGTTTCATTGCCTACATGCTCTCGCTTTACCTCTTCGGAAATCTGAGTCACAACGCAAACACAAAACCAGAGCTATTTTCAGGCCGTCATCTTTATGTCCTATCATTAATTCAaccatacttttttttaatttcagggTTTGATAGAATTGTGTGGAAATTTGGTTCTGAATCAGATTTAAATTAACAGCCAAGTGGCTGGATTCACAAAACTCCATAAGAAAATAAAAGACTTCTTAAATGACATTGAATGAAAAACGTTGGGAATATTTGTGACCTTAGACCACAAAACCACTATGTCAGAAGTGTCAAATTTTTAAAATTGCAATTTATACATCATATAAAAGCTAAACAAATAAGCTTTCCAAtaatgcatgttttgttttgataGGACAATATTCATCCATTCCGAATGTTATCACTTTGATCAAATGGTCGTTATCAGTGGTTAGCAGCTGATAggtatgggccagtaggggccttctgcacctactggtaggctcgtAAGGCTGTTATAATCCATCTACATGGTTAATGagttttgagttgccttaacttattgggttttacagtactcaatttgagatctcttcatttattgggttttactgtgctcaaactgcttcgtttactcaaatagatttcaaataaaagtttacagtactcattaggattagtttttttacttaaaccatttaaggaaaccaattgcagcaaaccatttaagttaccttaacgctttgggttttacagtgtagtattatTAGGGATGTGCAACAATTTCTGAGGTAATAATTAGTCTTGATGTAAACAATTATCTGTCAAGAATATCAAAACTGAAAACTAAGTaataattgaatatattttaactttaccacatgaaatacagaaacttacagtattttttttaaagctgatttTTGTGAATCCAACCCTTAGGTTCTGtgataattacaataattattgttctaGTACATTTGAAGAAATCTCATTCACCTCTGAATAAATTGTCTTAACAATTTACTAATCAAGAAATCTAATACAAAACAACATATTGCCTTTTTTGTAATTTAAGTCTTAAAAAGTAATTAACTTATATTGAAGAGATATGAAAGTGACGCAAACAACTTCAGTATCACAAAtcttaaataaacaaaccaatattATTAGTTCACTGACAATTCATATTACAGAGTTATCAAATGTGCAGCCAGCACTATGATATCCCATTATACCTTCAACTTCTTTGGATTTAAATCTCATTTCTTAATTCATCGACTCTTATCATAGCTCTTGATGAATCTGTCTGTCTAGGTTTTCCTGGTCTCCACATTTGCTCTTTCTCACTCGTTCTGTCTACATGTTTCATTGCACAAACGCTGATGCAGAATCAAATGCCATAATGTGGTTTGAATTACACAGCCATCTCAGAAGTCATGTGCTGGAACAAGTCATGATCAATGAGAGTTGAACTAAGGACACGACATTGACCTGTACTAAATGGGAAGAAGAAGAAACTATTTTAATATCATAGTATCACCTTCAATGTACAGTAAATAAGTATGGCCTTACCAAGCAactcaaaaaagaaaacagtacTAAAAATAGTCTGCTTCCTGTTTTCAGTCTATCCAGTGGGATATTGCACCCATAAATATGTTTTAGGGAcccaacagacacacacacatacacacaaaatatcTAATGGATTGTCGTTCGTTGCATTTCTAATGCGCTCGCTGTCAGGCTCTGGAATAAACATGAGCAGCATTAGTGAGACATTCCTGTCAGGCAGGTCGTAATTACCCCTGAAGCTTTCTGTTTCTCTTCCCCACAGTCAGTTCACTCTCACGGGGGGCTCTGTTCTGCTCAGCTTCCCTTGCCTGGAGCTCTGCTTCTCCATTCTGGGAATCACTATCCAACTTTTCTGTTCTCAGCTCCAAATTCCAGTATCGAAGATATTTCTACAAGAAAGTaactttttcttaaaacaaaattatCAGTCATTGtgcaaaaatttaattaatcacCTTAAAGTGCCCCATTGTGCTTTTTTCAGATTTACTTTACATGCATTTGCAAAGGATGAGGATTATTACTGTTCGTATTTCTCAGCATTAGAACTAGAATTAGTTTCCAACTGCTCTGTaagcagtcaaccaatcacaacttactgggtcatctgaccaattaaAGCAGAGTAAAATTTCAGAAAGGAGGGGCTTAGAGAATCCTTAAATGAACCATTTCAGACACTGTGAAAGAGCTAAAGCAgcaatctgtattttaaaaaaagtgcttTCGACCACAGATGGATGTAAACTTATTTTAGGACAAACTTTCACTATAAATTTAcattattagttattttactttaaaaaaatcaagtaaacCTATTGGCTTacaagcaacaagttgacttagTCCGCATGGACCAGCTgcgatagttttttttttccacattgcgacgcagttcctagagaaacagtatattaaatgagaaaacagtgggtgtggcttgtttttttttcaattgcaaGCTGAGTGAATGTAGTACAGTAGGCACTTCAATCAGAAAGATTAAAAAAGACACACCCTGCTTACCATTTCTCTTAGTTGTCATAGTGCTGTCAAAATAGACATTTGGAGGGGCGCGGTTAAGTATGTTGGCCACGCCCAATAGCTTGGACAGAAATAATCTgagaattgaactgaaaacaaacagaaagtgcaTTTTAAGATgtcaatagagtggaggaactacgacatcaatttgtatgcaaaaacatacaaattcatacaaattagccactaaattaaaaagttacgaattgccgtgggATTGCGTTGGGATTATCTggttggacaaaacgtgtaagtctaaggaacagtgtttgaacacagagcttattctttgcaatcttcgaaaaggcTAAGGGAAAATTCTATAgatttatgctagcagccgattagcctacaaggtgacgtcatCATTCCTCTACTCTATTTAaaaggcaaacttttttttttcttaatgacatgagcagattaattgttcaccacaaatcTAGCAATGTAAGCTGGCAAAATAaaaatggttagttttgattgtATGTGTACTTTAaagaaagtgagtaaatctgttgtaaCTTGCAACTGTAAAGCAATGGGTtaacacttatttttttaataaaaacaaaagggaCATGGACTATTCTCTGAGGTCCAGTTATGCTATTAAAACTTCAACATAAAGAACACCATCATTTAGAAGTGACTGACTGTTTTCTGTCCTGTTGAATGGGCGTGGCCAATTATAGACTCAGAAATAAACGCCCACTGCTTTAATTGGCTTACAGTTTAGAATAATAACATTGCCAAACAGGggggcgacgtggtggcgcagtatgtagtgctgtcgcctcacagcaagaaggtcgctggttggagccttggctgagtcagttggcattactgggtggaatttgcatgttctccccgtgtccgcatgGGTTACCTCCaggagctctggtttcccccacaagtccaaagacatgcagtataggttaattgggtaagctaaacttgtctgtagtgtatgtgtgtgaatgagtttgtatggatgtttcccagtgatgggttgcagctggaagggcatccgctgcgtaaaggctgaggcaaccccagattaataaagggactaagctgaaaagtaaatgaatgaatgaattgtcaaACAGGCAGTGACGTAGAAGTAGGTGTGAATCTACTCTGGAGGTGGAGCTTATCCACTCTATCACATCACTAGATCTAGAACCATTCAAAATCGATGGTTATGTCAGACTGCCTTCAATATAAGCTATTTTTAGAGGAACTGCAATGTTTTGAGCTTCAAAACTTACAGGATGTTTTATAGTACTACAAGTCCTCTAATGTCTAAAGACCAAGGGATTTTTGGTTTCTCAGTAAATGACCCCTTTACAATATCACACAAGGGGCACTTTAAACTGCGATGACCAGCTGATAGCTGTATTTAATGTCCTCTATCAGCTACCAGTTTAATATTTTCCAATTAGGACCATTATTCCAGTACTCAGTGCTAGTCTTGGACTGGTTTAAACTATTACACTACAAATTAAGTTCCAACCAGAAGTCATGCATCAGCTTATAGTTTGATATATGAGCAGTTGGAACATCTTTGCCTGTTGTTTTTTTGGCAAGCAGGTCCCTCCATTGGCTTTTATACGGTTTAAGTAGTTTGCATCTCCCCTGGCGCTGCACTTTCCATTAAATCGGGCAGCGAAGCGTATCATTGGCTCCCAGAGTTGCTCGCATGCTAGCATTTAATGCAGATCATGGGTTGAACGTTCACTCACGGGGCAATTCTGCTCTGATATTACTTGAAAAGAACCTGCCGAGATCAAGATAAAATCGCTTGTCTGAATGCACTGAGAGCAGATTGGGTTGTGTTTATCCCATGCCTTTTTTCCTTTATTGCAGAGCAGAGAAGTTGGCAGACATTGTAATGACAGTACAATAGAAATCGGAGTGACTGATGCTTCTCAGGGGGCGGTGGTGTGATgtataatattttgaaaatatggctatattttcatagactgtaaaattGATTGGTTGTTCTAATAATGTGTTCTGAGAGTATAAGCGTGAGGAAAAGCCATGTGTTTCACATATATTACAGCCATCAGGCGTCGATGCATTAATCAGTGAGCATCTAAAACAACTGAAGTAAACAAGTGGATTGATTCTTTATTCAGGAATGTGCCAAAGTTGCCGTAAATAAAACACCTCCACACTAAAATACCCAGTGTGGATAAAATGGTTATAAATCTCCATTTGTCAGCCAGAAAGTGTGTCAGAGGGAAAAAATTGTCTTATTTTCGATTTCAGCCCTGTCActtcatattttctcatttctaCATcagtaattcatatttttatatatatataaactgcatttttgttgttgtttttatattattttaaacagatttattcTTTGAGAGCAGTATTTTCTAGAAACTGTTTACTTTCGTAGCACTTACAACAGATTGAATTTGAACACTCAAAGAGTGTCCATCACCAGAAAGTGCCTGTGGACTGTCAGGTGTCTTTGAGAAATGTTCAACGCGTTTGATTTAATGTGTAATATTTGCTTACTTATGTTACTTGTGTGTTTCATGTTAattgtttgtgatttttgttCCTAAACCGTTGGTACTTTTTAATTATGTTGATAAAAATGTTGATGAAGATTAAAAACAGTACATTAATCATTATCCAGGTAAAACACATCCAGGTATTTTTATCTTTCGTGTTTTCGAGAACTGCAAACATGTACTAATTAGTATTATGTGTTGTTATCCAGTTAAAATATCTAGACATTCTTAAAACAAGATTTCAATTCTtaccactttttaatttttttaatgatttatgtgCATAAACCATATAAATGACATTGGATTTATGGTTCAgatgactcaaaaaaaaaaatctattactgaaaaatttccatattttctgatatttagttgcaatcagaattatagAAACCCCCTttgaaattattttagttttttaaatatttcccaaatgctgtttaacagagctaggacatttttacagcatgtctgaaaatatttttttcttacgaagaaagtcttatttgttttattttggcaagaataaaatcaggttttaatttttttttaaaaacattttaaggtcaaaattattagcccctttaagctatatatatttttaacactttacagaacaaaccatcattatacaataacttgcctaattaccctaacctgccttgttaacccaattaacctagttaagcctttaaatgtcacttcaagctgtatagaagtgtcttgaaaaatatcttgtcaaatactatgtactgtcatcatgacaaagataaaataaatcaattattagagattaatagttaaaactattatgtttagaaacgtgttcaAATTTTTGTtctatctgttaaacagaaattgggggaaaaataaaatggGGACTAATAATTGAGGGgttcaataattctgacttccactgtacatgggtgtttttacatttattatgtgTTCAAATTGCTTTATGTGACTTTGATCTCTGCTTTGACAACCCTTGAGGTTAAAAAGTTGAACTAAGTGCATTTTAATGACATCTTTATATGTTTGAATTATTTAATGTTCGGGTTGTTGATGCAAATTACAGCAGAAAAACCGGTTATGAGCTGTCAGTACTTTTACATCAAAAGCCGACAAGTTCTCATAATGCAATTGGAAAGCATAAACAACTGGGACACACCCATGAATGACAAAATACagataacagtttttttaaagtgtaggttaagcatatatatatatatatatatataaataaataaataaattaattaatttggttTTAAGGATGTTCAGATTATTTTTGCTGGAGACATGTTTGCAGTGTGAAGAGACATTTACTGTATACGTCACATCAGTCCTGTTATGGGAACATACTGTATGATGTACACTGAAAGCATCACAGGAATATCACTGTTAATCCACATCATTCACTTAACAGCGCAACCTAATGTACAGAAACCGCGAGTTCTTCACCTAATGAGTGGCAATATTTGATAATCCTGCGTTTCACAGATACGTTTTTATGAAAAGGGACTGTACATTAACTATTAGCTCGAATAGAGACTATATCACATTTAAGAGACTCAACCTTAGGATGTTAGAAAAGAGCCTTTACATGATGCTTTAGGAAACCAGTTGCCCTACAGTAGAGCTGAATGTCCTCTGTATGTAACCCATGCTGTTCACTtgcattgtgaaaaaaaatgttcCTGGAGTTGTTATGACAGTACACTTATGTAAACAAGAAAGCATTAGAATtctattaaatgataaaaaaaacaaacaaacaaatatga

Function

symbol description
ngfra Predicted to enable coreceptor activity; death receptor activity; and nerve growth factor binding activity. Predicted to be involved in Rho protein signal transduction. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease and mental depression. Orthologous to human NGFR (nerve growth factor receptor).

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015026 coreceptor activity molecular_function
GO:0048406 nerve growth factor binding molecular_function
GO:0005035 death receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050928-1 Predicted to enable coreceptor activity; death receptor activity; and nerve growth factor binding activity. Predicted to be involved in Rho protein signal transduction. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease and mental depression. Orthologous to human NGFR (nerve growth factor receptor).

Ensembl:

ensembl_id ENSDARG00000088708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049872 True 9139 mRNA 0.39 6 20156956 20231781

Neighbor

gene id symbol gene type direction distance location
XLOC_025257 NA coding upstream 92224 20059678 ~ 20064732 (+)
XLOC_025256 tmub2 coding upstream 135360 20012891 ~ 20021596 (+)
XLOC_025255 asb16 coding upstream 145149 20001608 ~ 20011807 (+)
XLOC_025254 vat1 coding upstream 185182 19914332 ~ 19971774 (+)
XLOC_025253 mrc2 coding upstream 343430 19732173 ~ 19813526 (+)
XLOC_025260 nxph3 coding downstream 173131 20404912 ~ 20461702 (+)
XLOC_025261 NA coding downstream 259421 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 coding downstream 448142 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 coding downstream 681529 20913310 ~ 20915154 (+)
XLOC_025264 zwi coding downstream 793372 21025153 ~ 21030873 (+)
XLOC_025429 BX649540.1 misc downstream 10016958 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 683759 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 807139 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 843849 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 1239373 18917461 ~ 18917583 (+)
XLOC_025265 NA non-coding downstream 826073 21057854 ~ 21066838 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03803160_03827982 NGFRA coding CI01000034 null 3802832 ~ 3827982 (-)