G589252


Basic Information

Item Value
gene id G589252
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25272304 ~ 25310601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671974
aggaaaggaagacccagagttacctctgctgcagaagataagttcattagaggtaactgcacctcagattgcagcccaaataaatgcttcatagttcaagtaacagacacatctcaacatcaactgttcagactgtgtgaatcaggccttcatggtcgaattgctgttaAGAAAaaactactaaaagacaccaataagaagacttgcttgggcaaagacttgcttgggccaataaacaatcaattaatggacattagactggtggaaatctgtcctttggtctgatgagtccaaatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU671974 True 297 lncRNA 0.40 2 25272304 25310601

Neighbor

gene id symbol gene type direction distance location
spp2 spp2 coding upstream 58693 25203120 ~ 25213611 (+)
LOC110527563 alg11 coding upstream 69301 25199166 ~ 25278853 (+)
LOC110527561 LOC106575089 coding upstream 156310 24997922 ~ 25115994 (+)
LOC110527559 plcc coding upstream 369734 24872421 ~ 24902570 (+)
pdxkb LOC106574311 coding upstream 401393 24837284 ~ 24870911 (+)
LOC100136274 LOC100136274 coding downstream 4599 25315200 ~ 25321925 (+)
mdh1b mdh1b coding downstream 26810 25337411 ~ 25341310 (+)
LOC110527571 LOC106575097 coding downstream 32110 25342711 ~ 25346307 (+)
LOC110528820 LOC106575143 coding downstream 456626 25767227 ~ 25769101 (+)
LOC110527576 LOC106575106 coding downstream 492949 25803550 ~ 25874508 (+)
G589245 NA non-coding upstream 15140 25254255 ~ 25257164 (+)
G589239 NA non-coding upstream 30631 25240576 ~ 25241673 (+)
G589234 NA non-coding upstream 37857 25233908 ~ 25234447 (+)
G589224 NA non-coding upstream 74046 25197969 ~ 25198258 (+)
G589214 NA non-coding upstream 75501 25176437 ~ 25196803 (+)
G589229 NA non-coding downstream 14948 25325549 ~ 25326636 (+)
G589292 fastkd2 non-coding downstream 22555 25333156 ~ 25335529 (+)
G589305 NA non-coding downstream 48306 25358907 ~ 25359795 (+)
G589330 NA non-coding downstream 89197 25399798 ~ 25400173 (+)
G589339 NA non-coding downstream 96109 25406710 ~ 25406984 (+)
G588755 NA other upstream 366723 24904331 ~ 24905581 (+)
G587660 NA other upstream 1464304 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1650935 23609520 ~ 23621369 (+)
G586685 NA other upstream 2257184 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2568483 22684527 ~ 22722539 (+)
G589734 NA other downstream 293004 25587088 ~ 25608606 (+)
G589933 NA other downstream 693329 26003930 ~ 26025309 (+)
G590936 gart other downstream 1241953 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1266806 26577407 ~ 26577933 (+)
G592134 NA other downstream 2172449 27483050 ~ 27483796 (+)

Expression


Co-expression Network