G589229


Basic Information

Item Value
gene id G589229
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25325549 ~ 25326636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU671946
cctggaatgcatttcaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaatgcatttgagccaatcagatatgttgtgacaaggtaagggtagtatacagaagatagccctatttggtagaagaccaagtccatattacagcaagaagagctcaaataagcaaagagaaatgacagtccatcattacttgaagacatgaaggtcagtcaatccagaacatgtCAAGCACATTGAAAGTTCCTTCAAGtatagttgcaaaaaccatcaagtgccatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctatgctgcagaggatatgttcattagagttaacagatTATCAGATtatcagattgcagcccaaataaatgcttcagagagttcaagtaacagacacatctcaacattcaCGCTGTCTCCTTGGAATAgttaatcaggcctttgtggttgaattgctgcaaagaaaccactactaaaagacaccaataagaagagacttggacCAAGAAACTCAAGCAatggactggtggaaatctgtcctttggtctgatgagtccaaattttagatttttggttgcaaccgccgtgtctttgtgactcagagtaggtgaacggatgatctctacatatatggttcccaccgtgaagaatggaggtgggggtgtgatggtgctttgctggtgacaaggTCTGTGATTTAGTTAAGagttcaaggcatacttaacctgcatggctaccacagcattctgcagcgatacaccatcccatctggtttgcccttagtgggactatcatttgtttttccaacaggacaatgacccaaaacacacctccaggctgtgtaagggctatttgaccaagaaggaaagtgacagagtgacctggcctccacaatccaattgagattgcttgggatgagttgggccgcagagtgaaggaaaagcagccaacaattactcagcatatgtgggaactccttcaagactgttggaaaaacatttcttatgaagctggttgagagaatgccaagagtgttcaaa

Function

NR:

description
hypothetical protein EH28_19535

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU671946 True 1088 lncRNA 0.42 1 25325549 25326636

Neighbor

gene id symbol gene type direction distance location
LOC100136274 LOC100136274 coding upstream 3624 25315200 ~ 25321925 (+)
LOC110527567 LOC106575093 coding upstream 13035 25301800 ~ 25312514 (+)
spp2 spp2 coding upstream 111938 25203120 ~ 25213611 (+)
LOC110527563 alg11 coding upstream 122546 25199166 ~ 25278853 (+)
LOC110527561 LOC106575089 coding upstream 209555 24997922 ~ 25115994 (+)
mdh1b mdh1b coding downstream 10775 25337411 ~ 25341310 (+)
LOC110527571 LOC106575097 coding downstream 16075 25342711 ~ 25346307 (+)
LOC110528820 LOC106575143 coding downstream 440591 25767227 ~ 25769101 (+)
LOC110527576 LOC106575106 coding downstream 476914 25803550 ~ 25874508 (+)
LOC110527578 LOC106575107 coding downstream 568093 25894729 ~ 25903497 (+)
G589252 NA non-coding upstream 14948 25272304 ~ 25310601 (+)
G589245 NA non-coding upstream 68385 25254255 ~ 25257164 (+)
G589239 NA non-coding upstream 83876 25240576 ~ 25241673 (+)
G589234 NA non-coding upstream 91102 25233908 ~ 25234447 (+)
G589292 fastkd2 non-coding downstream 6520 25333156 ~ 25335529 (+)
G589305 NA non-coding downstream 32271 25358907 ~ 25359795 (+)
G589330 NA non-coding downstream 73162 25399798 ~ 25400173 (+)
G589339 NA non-coding downstream 80074 25406710 ~ 25406984 (+)
G589347 NA non-coding downstream 91819 25418455 ~ 25419032 (+)
G588755 NA other upstream 419968 24904331 ~ 24905581 (+)
G587660 NA other upstream 1517549 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1704180 23609520 ~ 23621369 (+)
G586685 NA other upstream 2310429 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2621728 22684527 ~ 22722539 (+)
G589734 NA other downstream 276969 25587088 ~ 25608606 (+)
G589933 NA other downstream 677294 26003930 ~ 26025309 (+)
G590936 gart other downstream 1225918 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1250771 26577407 ~ 26577933 (+)
G592134 NA other downstream 2156414 27483050 ~ 27483796 (+)

Expression


Co-expression Network