G589292 (fastkd2)


Basic Information

Item Value
gene id G589292
gene name fastkd2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25333156 ~ 25335529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU672022
AAGCAGTATAGTATTAGTGTATATAATGTAGTATGGTAAATTATAGTATACAGTAGAATGGTAAGTTATAGCATAGTATACAGTAGtatggtatattatagtatacagtagtagtatggtacaGGTCACCTGTTTGTTGTTCCACATGGTGATGCTGGAGGCCACGTAGTCAGAGATGGCGGTGAACAGGGCCACGTCTCTGGAGTGCAGCTCCTTATAGGCCCTCAGCACACTCACCAGGCGGTGGAAGGGGACTCCGTGGACATGCTCTGCAATCTTCCTGCTGCAGACGGCCAACAGTGGCTTGGAGCAGAAGCCCATAGAGGCCAGCGTAGTGATCATATACTGGGAGTTCGGAAGAGTGAACTGGTCTGCCAATGACAGGGCCTTTCTctccagTTTTTTCTTGATGTCCACCGGGGTATCCCGGCCCATGTGGCGCATCAAGGTCTGAAGGGACATGACGTTCTGGATGCTCGGCAGTAGAGCCTCGATCATTAGCCTGACTCCCTCCTTCAGTGCGTCCCCATTGGGGCTGCTCT

Function

symbol description
fastkd2 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Used to study combined oxidative phosphorylation deficiency. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human FASTKD2 (FAST kinase domains 2).

NR:

description
FAST kinase domain-containing protein 2, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU672022 True 542 lncRNA 0.50 4 25333156 25335529

Neighbor

gene id symbol gene type direction distance location
LOC100136274 LOC100136274 coding upstream 11231 25315200 ~ 25321925 (+)
LOC110527567 LOC106575093 coding upstream 20642 25301800 ~ 25312514 (+)
spp2 spp2 coding upstream 119545 25203120 ~ 25213611 (+)
LOC110527563 alg11 coding upstream 130153 25199166 ~ 25278853 (+)
LOC110527561 LOC106575089 coding upstream 217162 24997922 ~ 25115994 (+)
mdh1b mdh1b coding downstream 1882 25337411 ~ 25341310 (+)
LOC110527571 LOC106575097 coding downstream 7182 25342711 ~ 25346307 (+)
LOC110528820 LOC106575143 coding downstream 431698 25767227 ~ 25769101 (+)
LOC110527576 LOC106575106 coding downstream 468021 25803550 ~ 25874508 (+)
LOC110527578 LOC106575107 coding downstream 559200 25894729 ~ 25903497 (+)
G589229 NA non-coding upstream 6520 25325549 ~ 25326636 (+)
G589252 NA non-coding upstream 22555 25272304 ~ 25310601 (+)
G589305 NA non-coding downstream 23378 25358907 ~ 25359795 (+)
G589330 NA non-coding downstream 64269 25399798 ~ 25400173 (+)
G589339 NA non-coding downstream 71181 25406710 ~ 25406984 (+)
G589347 NA non-coding downstream 82926 25418455 ~ 25419032 (+)
G589358 NA non-coding downstream 95821 25431350 ~ 25431583 (+)
G588755 NA other upstream 427575 24904331 ~ 24905581 (+)
G587660 NA other upstream 1525156 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1711787 23609520 ~ 23621369 (+)
G586685 NA other upstream 2318036 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2629335 22684527 ~ 22722539 (+)
G589734 NA other downstream 268076 25587088 ~ 25608606 (+)
G589933 NA other downstream 668401 26003930 ~ 26025309 (+)
G590936 gart other downstream 1217025 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1241878 26577407 ~ 26577933 (+)
G592134 NA other downstream 2147521 27483050 ~ 27483796 (+)

Expression


Co-expression Network