XLOC_025260 (nxph3)


Basic Information

Item Value
gene id XLOC_025260
gene name nxph3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20404912 ~ 20461702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049873
CACTGGGATCCTAAACCGTCACCAGCACATAAAAGCGCGGATAACGGAGATGATTCGCCTCACACCGCAACACAACACGGAGCAAAGTGTGCGCAGATGGCAGCGATGAAGTGTCCTGTCAGTTACCACACAGCTTTGGATGTGGCGCGCTCCAAGTAGCGGGAGTTTACTGTGACAGACAGCAGGTGGGATTCCCACTTCGAGGAGAGCTCGCGCGCTTGACTTTTTTTGTTGGACATGGGACCGGGTCTCGCCTGTTTTGGATACGGTACCGGAGGAACCGCGGCTTCTTGAACGGAGAGCTGTCGACAGCTGGACACCGACGAGATGCGCTCCGACCACGGCTTCATCCTGCTGCTCCTCAACGGGACAGCGTGCTTGTTGGCTCTAGGACAAGAAGAAACCCACTCGTCATCATCTTCCTTCACCTCCTCCACGTCAAAGTCGTCCTCTCCAGCAGACTCCTCCAAAACTCTGGGGGTTCTGGGATCTCAGGGTTCGATTTCTCCTCTGAGCCGCTGGATGATGCACAGCCGTGGCCGTGCTGCCAACACTTCAACGATGGAGCTGCCCTACCGCTCGCCGGTGCCCTTTTCCAAACAGGAATTTTGGGAAATGCTGGGTAGCGACCTTCTCAAGTCGGACACTGACGCATTAGGGAACTCCCGAGTCAAGCGCCGTCCCCCGATTGTCAAAACGGGCAAATTTAAGAAGATGTTCGGGTGGGGGGACTTCTACTCCAACATCAAGACTGTGCGCCTTAACCTGCTCATCACGGGTAAGATTGTGGATCACGGGAACGGCACTTTTAGTGTGTATTTCCGTCACAATTCCACCGGCCAGGGGAACATCTCCGTCAGCCTGGTACCACCAGTGAAGGCTGT

Function

symbol description
nxph3 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000070694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049873 True 884 mRNA 0.55 2 20404912 20461702

Neighbor

gene id symbol gene type direction distance location
XLOC_025258 ngfra coding upstream 173131 20156956 ~ 20231781 (+)
XLOC_025259 NA coding upstream 206293 20198302 ~ 20198619 (+)
XLOC_025257 NA coding upstream 340180 20059678 ~ 20064732 (+)
XLOC_025256 tmub2 coding upstream 383316 20012891 ~ 20021596 (+)
XLOC_025255 asb16 coding upstream 393105 20001608 ~ 20011807 (+)
XLOC_025261 NA coding downstream 29500 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 coding downstream 218221 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 coding downstream 451608 20913310 ~ 20915154 (+)
XLOC_025264 zwi coding downstream 563451 21025153 ~ 21030873 (+)
XLOC_025265 NA coding downstream 596152 21057854 ~ 21066838 (+)
XLOC_025429 BX649540.1 misc downstream 9787037 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 931715 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 1055095 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 1091805 19312991 ~ 19313107 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03659420_03661699 NXPH3 coding CI01000034 null 3659290 ~ 3661699 (-)
bowfin (Amia calva) AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding CM030122.1 CM030122.1 33877103 ~ 33880678 (-)