G590936 (gart)


Basic Information

Item Value
gene id G590936
gene name gart
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26552554 ~ 26553542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU673811
GCCGATATTCCTTCATAATTTGCTCGATAACGTTATGGAAAAGGGTTCATTGGATAAATGTGGCAACTTCTCTTGCTGCGATAAACTATTGGGCGGTGCTAGTTTTCAGGCCTCGTCAGTGGGTTGAGGGGTCATTGGGGCTAGAAATGTTTGCTTGACCTAGCAACCCATCAGTATATAGCTAATTCTGCTACTGAGATCTGATGAGAGCATGCACGCGCATCAGTTGAACATGTTTACTTGTAATAAAAACACTAATGTTATACACATCTGTTGACACATGGCAGTGTTTTCAATTTCAGAAAGtgacacacaccatacacaacaCTAACCTGTGCCTGAGATGAGGACGCCCACCCTGGTCCTCTTGCGGGGGACGGTGCTACTGCTGTCCCCTTGAGATGCTCCGTTCTGCATGGGCCCCAGGTCTACTACACAGGGAGAGGGGCCTAAACGCAGGCTGTGCTTCAGGTTCCTGATCACCACCGGCTCGGCCCCAGGCTGCTTGTGGGCCAGCGAGCCCACGATCCACGCATCCTCGTGGGCTTGGAGCTTCCTCAGAACACTCTGGGCATCCGGAAAGGCCACCACCAGCACGGCCCCAAGGCCACAGTTGAAGGTGCGCCCCATCTCCTCCTCGCACAAGCCCCCCTCCTCCTGGAGCCATGAGAACACAGGAGGGATGATCCAACGGGAGGCGTC

Function

symbol description
gart Predicted to enable phosphoribosylamine-glycine ligase activity and phosphoribosylformylglycinamidine cyclo-ligase activity. Acts upstream of or within camera-type eye development; chordate embryonic development; and pigmentation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pigment cell; and yolk syncytial layer. Orthologous to human GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase).

NR:

description
trifunctional purine biosynthetic protein adenosine-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU673811 True 702 TUCP 0.53 2 26552554 26553542

Neighbor

gene id symbol gene type direction distance location
n6amt1 n6amt1 coding upstream 8870 26535783 ~ 26543684 (+)
jam2a LOC106575111 coding upstream 580156 25956422 ~ 25972398 (+)
mrpl39 LOC106575108 coding upstream 603234 25939547 ~ 25949320 (+)
LOC110527579 LOC106575110 coding upstream 618190 25921719 ~ 25934364 (+)
LOC110527578 LOC106575107 coding upstream 649057 25894729 ~ 25903497 (+)
LOC118965273 NA coding downstream 31977 26585519 ~ 26595151 (+)
LOC110527592 LOC106575150 coding downstream 905152 27458694 ~ 27482580 (+)
LOC110527593 LOC106575124 coding downstream 952367 27505909 ~ 27555139 (+)
plekha3 LOC106575131 coding downstream 1300756 27854006 ~ 27874521 (+)
LOC100653476 LOC106575134 coding downstream 1591994 28145536 ~ 28168201 (+)
G590924 NA non-coding upstream 21332 26530796 ~ 26531222 (+)
G590916 NA non-coding upstream 30981 26521374 ~ 26521573 (+)
G590914 NA non-coding upstream 41206 26511001 ~ 26511348 (+)
G590906 NA non-coding upstream 48643 26503703 ~ 26503911 (+)
G590948 NA non-coding downstream 21571 26575113 ~ 26577377 (+)
G590960 NA non-coding downstream 44652 26598194 ~ 26598422 (+)
G591014 NA non-coding downstream 136729 26690271 ~ 26690499 (+)
G591018 NA non-coding downstream 143342 26696884 ~ 26697106 (+)
G591023 NA non-coding downstream 176107 26729649 ~ 26732886 (+)
G589933 NA other upstream 527245 26003930 ~ 26025309 (+)
G589734 NA other upstream 943948 25587088 ~ 25608606 (+)
G588755 NA other upstream 1646973 24904331 ~ 24905581 (+)
G587660 NA other upstream 2744554 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 2931185 23609520 ~ 23621369 (+)
G590949 LOC106575121 other downstream 23865 26577407 ~ 26577933 (+)
G592134 NA other downstream 929508 27483050 ~ 27483796 (+)
G592445 lig4 other downstream 1150041 27703583 ~ 27707294 (+)
G593144 NA other downstream 2281667 28835209 ~ 28841083 (+)

Expression


Co-expression Network