XLOC_025272


Basic Information

Item Value
gene id XLOC_025272
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21378996 ~ 21597908 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049882
GTTCAAAAGCTGACAGTTCCCCACAGGTGTGTTCATGGCTTCTTCTTGGTCCACGAGGACGTTCCAGTGAAACAATGGGGCACAGGCCTGTCTCCCGTTTGCATGAGGAGGATTCCTGGGCTTCTTGGAAAGGTCTTTCAGGAACGTCTCTTTGTATTCGGTCACCCAGTCGCCAAAGCAGCTCCAGCAAGGACGAAGCAGCAGGTCATGCAGAAACCAGGTTAGGAGAGAGCCAGAGCAAGGCCCAACCCAATACACCTGCACAGGGCCAGaaatgtatcgCTTCTGCCTTCCTTACCGCCATGAGATGACCGAGGGTGTCCGACAGGCCGGTGACAGCAGGAGGATTGGAGGAAAATGCGGATTTGGGATGAGTGGCAGCCTGGACACACAGCACTAGCTGGAATGTAACAGCCGTTTACACTAACAGAGCCTGATACAGATACACCCCCGGGGCCACCTGAAGCAGGGCAAGAGcagttttatttgttattgttggACACGATCATTCTCTTAGATTGTCTCCATCTCCTTTCCTCATTCACTCCAATATCAGTCTCGATCGTGAAAGTAATGGACATGTCAGTCCTAATTTTAGG
>TCONS_00049883
TTCCAGTGAAACAATGGGGCACAGGCCTGTCTCCCGTTTGCATGAGGAGGATTCCTGGGCTTCTTGGAAAGGTCTTTCAGGAACGTCTCTTTGTATTCGGTCACCCAGTCGCCAAAGCAGCTCCAGCAAGGACGAAGCAGCAGGTCATGCAGAAACCAGGTTAGGAGAGAGCCAGAGCAAGGCCCAACCCAATACACCTGCACAGGGCCAGTTGTGTGACCATCATCACTGGAGCCTACTCGAGCCTACTCGTCTGCATTATACTCCTCGTCATGCCCAGGGTGACGGACCCTCAGTCAGCAAACCCAAAGAAAGACTCCTGGCCAAGAATATCATAAAATCAATATAAGACAAAAGGAATGGGATATATGCCCCAAGGCTGAATGAAACAAATGAAGGTCTCTGATGAAAAAAATGTTGACCTGCATAATCAGATTCAAACAAGTATGAG
>TCONS_00052644
TGAATTTgaggtcaactatccctttaagtaaagcCAGCAAATCAAGCAACAATCAAACTGACGCCCAGTTGTGTGACCATCATCACTGGAGCCTACTCGAGCCTACTCGTCTGCATTATACTCCTCGTCATGCCCAGGGTGACGGACCCTCAGTCAGCAAACCCAAAGAAAGACTCCTGGCCAAGAATATCATAAAATCAATATAAGACAAAAGGAATGGGATATATGCCCCAAGGCTGAATGAAACAAATGAAGGTCTCTGATGAAAAAAATGTTGACCTGCATAATCAGATTCAAACAAGTATGAGTGTGTTTTATCTCTTGGACGCTAATGGATGCCTGACGTTCCCTCTGCAGATTGGTGCATTCACAAATCTAACAATCTCAG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051310 metaphase plate congression biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097315

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049882 False 599 lncRNA 0.51 3 21378996 21394931
TCONS_00049883 False 451 lncRNA 0.49 4 21379057 21596667
TCONS_00052644 True 388 lncRNA 0.43 4 21422770 21597908

Neighbor

gene id symbol gene type direction distance location
XLOC_025271 NA coding upstream 58511 21312584 ~ 21320485 (+)
XLOC_025270 NA coding upstream 127189 21245897 ~ 21251807 (+)
XLOC_025269 zgc:153968 coding upstream 148328 21225750 ~ 21230668 (+)
XLOC_025268 zgc:112038 coding upstream 160863 21200763 ~ 21218133 (+)
XLOC_025267 zgc:123295 coding upstream 180252 21189766 ~ 21198744 (+)
XLOC_025273 crhr1 coding downstream 71637 21669545 ~ 21889616 (+)
XLOC_025274 NA coding downstream 332020 21929928 ~ 21997558 (+)
XLOC_025275 cdc27 coding downstream 437955 22035863 ~ 22155532 (+)
XLOC_025276 NA coding downstream 560025 22157933 ~ 22162482 (+)
XLOC_025277 scn4ab coding downstream 644361 22242269 ~ 22316844 (+)
XLOC_025429 BX649540.1 misc downstream 8650831 30248739 ~ 30249036 (+)
XLOC_025266 NA non-coding upstream 235625 21137095 ~ 21143371 (+)
XLOC_025265 NA non-coding upstream 312158 21057854 ~ 21066838 (+)
XLOC_025264 zwi non-coding upstream 348123 21025153 ~ 21030873 (+)
XLOC_025283 BX649557.1 non-coding downstream 971079 22568987 ~ 22569106 (+)
XLOC_025285 NA non-coding downstream 1248428 22846336 ~ 22848196 (+)
XLOC_025286 BX322574.1 non-coding downstream 1256765 22854673 ~ 22880447 (+)

Expression


Co-expression Network