G592445 (lig4)


Basic Information

Item Value
gene id G592445
gene name lig4
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27703583 ~ 27707294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU675374
cccaacctcagcctcgggaccccaagggtaAGACGTTttagtttttgccctagcactacacagctgattcaaataatcaactaatcatcaagctgtgtagtgttaaggcaaaaaccaaaacgttcaCCCTTTGGTGTCTCGCTGCCAGTTTGGGAAATGATGGGATTGACAGTCTCAAATATCTCAACACAATAGTCTGCATTGGTAAGGACATTAAAATAGCTTACTTACCTCAATTAAAGTAGATACACCATTACATATAGGCCTACACTATATCCATATTGAAATGTGTAGAAAAACACTGGATAACGTTACCTTCTGATTCAGAAAATCctttaaaacaaacatttatttacactctaaaatggattaaaacaaaaTATTACAATCCCAGAGATATGTCAATCATAACGTGCTTATTGTCCAGTGCTTGCATTACACTAGGTAGTCATTGTCATTCCGCAAAAACCCTGCGCTGATAGATTCTGTTACCCATGACTCTCTAACAATCTTAAACTTTTTGGTAAAGAGTCGTCTGAGGGTTCTTAAAGCCAACACTCTTGTTTCCTCCACCACTATGACATGAGAGACCCCTTCCTCAAGCTTCTGCACTACTGTCCCTCCGTGGAAGCGGAATTCCAGAGCCCGCGTGTCCAGACAAGTTGCCGGTACGATGCTTTTAGGGTCTCCTATGTCTGCGTATCTGTCCATGTAGACCCTGAAAGGTCTGAACATGCTAGTGGGGAGGTCATCCCAGCTGAAGCGTTCCTCCAACTTAGCGATGCACTGTGCCGTCAAAGTGTCCACTCTACCAATCCGACCAAAGACTTCCCTCAGCTGCTGCTCGTCCGTGTCCACAAAGTAGCTGTCTCCGTAGCAGTCGTATTCCTTGGCAAAGTGCTCCTTGGTGGAGGGTGAAATGTGTATCATGTGACGCGGTTGCCATGGCACCACCTGCTTCCTGTCTAGGCACTCCAGCAGCCAGGCAGCCCACACTACGTCGTGCTGGTCTGAAGAGATCAGGTTCTTCACGCGCATGTTCTCCACAGCGGCGATCACACAGTAGGTGTCCGGTCCCGGGTTCTGGACTACAATACCGCCACATCGGGCCACTGCTTTCTCCAGCTCCGCCTTGGGGTGCGCCTCATTGCCATTCATAACGCAGAACTCCACGTCCTCGAACATGTCCGTCTCCTTGGTAACGCCAGATAGGTCCTGGGACTTGAAGTGGTCGATGACGCCGACAGCTTTCTTGGGCTTGGCCGCTGCCGGCAACTTGCGCTTCTTCTTTTCAGGCTCGTCATTGATGCGGAGGTGGCGCGAGAACAACTTCCCGGACGCCTTGTTGCGAAACTGATCGAGCTCAGCTAGGGTCATGCACTGGTGCCACTCTTTGTCCTCCCGGATCTTCTCGATCCTGGGGAAGCGTAGCGTGCAGTTGGTTTTGTACATCTCACTACTGACTATTTCTGCTGCCTTCACCTGGATGATGACCGAGTTGCACGGGTCAATGTAGACTTCTGGTCTCTCCGTCCCACACAGAATAGAGGCCGGAGGGTCGTTCTTCCGGTAGACTTTCCAGTGCTTGGCCAGCTTCAACCCCAAGTCATACAGCTCCTTCATGGTGTAGCCGGAACCGATGCGACAGAGCGTGTGGAAAacggagggtttctctccaggctTCGGAGCTTCGGCCACCGCGACGAGGAAATGAGACATCATGCCACCTCGCCTTCCTTTTCCCCAGTAGCCTCCGACAATCAACAGGTCGAGCTCATCCATCAAGCCATCAACGTACTCCGGCTTTATCTTGAGCCAGCCCTCACCTCGCTTATCGGGCTTGTAGACGGATGAGGGATCTTTCACCATGATGCCCTCTTCCCTGTTGTCAATGGCTTCGTTGAGGGCGTTTACCACCTCTTGCATAGTTTTGGCCTCCGTTTTCGGCACCACGTGTATCCTCCCTTTAACAGGAGTGAGGACAGTCTGAAGGTTGTCGTGGCGCACCTTCAACGTCTCGTTGCCAAACTTGTGGTCGTTCACAAGAAGTACATCGAAAACGCAAAAGCACGTCTGCAGCTCGGAGTCATCCACTAGCCTCTTGATGTCAAACTTGCTTCCTTTTTGCATGAAGGTGTCGGTAGTGGGGTTGTACGCCATCATCTCCCCATCCAGGATGCATTTGACTACATGGGGCTTGAAGACATTGTGGATGAAAGGCGTCAGGGAGCCCTCTAGCGGCGATGCACCAAACTGCTGGGTGTACTCGAAGGAGTTCCGTGTGAAGTACTTGTAGACGTCGCCATCCTTGTGCAGCTGGATGCGCTCTCCATCCAGCTTGGTCTCTATGAAGAAGGTGCTGTTGCCCATCTGCTTCTCCACCTGGCGCATGTTGGCCACGGCGGCCAGCATAGGTTTGAAGGCAAAGAACAGGCCAATGGACACTTCGCTGAGGGACACAAAGGGGTCGTGGAGCTGCCGGCACACCTTGTTTAGGTCTGTGGTGACGTTATAGAGCTCGGCCGCATCTAAGTGGAACACCTGGAGCACGGTCTCTTTGCTGACCCCCAGCTTCATGTCCTTCAAGATCATGCGGATAAGCCACTTCTGCTCCAGTGCCGTGCTCTGGGTGATAAGGTGCAGCAGGCTCTTCTTCACCAGGTCCTTCTGCTTACCAGCATTGTTGATGGCCACAGAGTCCAGAAAGTCGTTGACTTCTCTGATGGTGAGGTTTCCCTGGCTTGTGCAGCGTTTCTTCAACACAAAGTAGGTCATAAGAGCGAAATCTCCTGCCTCCCCCTGAGATGTGGTGGGGGTGCGGTAATTCAACAGTTTGTTGGCTTCCGGTCCATTCTTGGGGAGACCCAAGACGTCTATGTAGAGCTTGGCTAACATACTCTCTTTAATGCCATAGGCCACACGCTCCCTTTCGAACGAGGGGACTATGAGACGCATGGCCGGGTAGAAAGAGTCTGTGGTGGTAGGGTTGTCTTTGTGGAGGGCCGCATGGAATTTCCTCCAGGAGTCTATGAAGTCACGGAGAAACTTTGATTTGTCTGGTCGGAGTTTGGTCTTCTGTATTTTTTCAAGCGTAGTGCACAGGTGAAGAAATGGAACTTGAGCAGCGACAGAGCTCTGGGGAGCAGCAGATTCGCTTTTTGAGGTTCCCTCCATTGTAAAagctaaaaaaaaccTCAAAGCAACCAGCCAACTCGTCAGTGTCTTGCAACTCTTTGGGGATCCCTCCTCTACAACATGCTGTGACATGCCCGGGTTATGACTGCATCCATCATACGTGTCCTGACG

Function

symbol description
lig4 Predicted to enable ATP binding activity; DNA binding activity; and DNA ligase (ATP) activity. Acts upstream of or within double-strand break repair via nonhomologous end joining. Predicted to be part of DNA ligase IV complex and DNA-dependent protein kinase-DNA ligase 4 complex. Human ortholog(s) of this gene implicated in several diseases, including DNA ligase IV deficiency; colorectal cancer; high grade glioma; multiple myeloma; and prostate cancer. Orthologous to human LIG4 (DNA ligase 4).

NR:

description
DNA ligase 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU675374 True 3306 TUCP 0.51 2 27703583 27707294

Neighbor

gene id symbol gene type direction distance location
LOC110527593 LOC106575124 coding upstream 148828 27505909 ~ 27555139 (+)
LOC110527592 LOC106575150 coding upstream 221003 27458694 ~ 27482580 (+)
LOC118965273 NA coding upstream 1108432 26585519 ~ 26595151 (+)
n6amt1 n6amt1 coding upstream 1159899 26535783 ~ 26543684 (+)
jam2a LOC106575111 coding upstream 1731185 25956422 ~ 25972398 (+)
plekha3 LOC106575131 coding downstream 147004 27854006 ~ 27874521 (+)
LOC100653476 LOC106575134 coding downstream 438242 28145536 ~ 28168201 (+)
LOC118965275 LOC106575153 coding downstream 514331 28221625 ~ 28258442 (+)
LOC110527602 LOC105007064 coding downstream 598973 28306267 ~ 28368030 (+)
mtx2 mtx2 coding downstream 959122 28666416 ~ 28686793 (+)
G592444 NA non-coding upstream 776 27702486 ~ 27702807 (+)
G592438 NA non-coding upstream 4162 27699077 ~ 27699421 (+)
G592432 NA non-coding upstream 5639 27697646 ~ 27697944 (+)
G592278 NA non-coding upstream 11894 27691604 ~ 27691689 (+)
G592264 NA non-coding upstream 35813 27667554 ~ 27667770 (+)
G592447 NA non-coding downstream 5359 27712653 ~ 27712787 (+)
G592472 NA non-coding downstream 18610 27725904 ~ 27726181 (+)
G592481 LOC100846954 non-coding downstream 27152 27734446 ~ 27734785 (+)
G592485 NA non-coding downstream 33723 27741017 ~ 27744833 (+)
G592568 NA non-coding downstream 143455 27850749 ~ 27892133 (+)
G592134 NA other upstream 219787 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1125650 26577407 ~ 26577933 (+)
G590936 gart other upstream 1150041 26552554 ~ 26553542 (+)
G589933 NA other upstream 1678274 26003930 ~ 26025309 (+)
G589734 NA other upstream 2094977 25587088 ~ 25608606 (+)
G593144 NA other downstream 1127915 28835209 ~ 28841083 (+)
G593171 NA other downstream 1184869 28892163 ~ 28892425 (+)
G593283 NA other downstream 1352404 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 1622378 29329584 ~ 29503787 (+)

Expression


Co-expression Network