G592684


Basic Information

Item Value
gene id G592684
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28022903 ~ 28138362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU675632
actttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtaaacagcagttttcagttctttccacagattctcgattggattcagggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttgcttttacgccaaacacaacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatactactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccatgtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctaggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccgcttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagc
>TU675633
actttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtaaacagcagttttcagttctttccacagattctcgattggattcagggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttgcttttacgccaaacacaacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatactactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccatgtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctaggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgatt

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU675632 False 1329 lncRNA 0.42 2 28022903 28084021
TU675633 True 1068 lncRNA 0.44 3 28022903 28138362

Neighbor

gene id symbol gene type direction distance location
plekha3 LOC106575131 coding upstream 148382 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 468148 27505909 ~ 27555139 (+)
LOC110527592 LOC106575150 coding upstream 540323 27458694 ~ 27482580 (+)
LOC118965273 NA coding upstream 1427752 26585519 ~ 26595151 (+)
n6amt1 n6amt1 coding upstream 1479219 26535783 ~ 26543684 (+)
LOC100653476 LOC106575134 coding downstream 7174 28145536 ~ 28168201 (+)
LOC118965275 LOC106575153 coding downstream 83263 28221625 ~ 28258442 (+)
LOC110527602 LOC105007064 coding downstream 167905 28306267 ~ 28368030 (+)
mtx2 mtx2 coding downstream 528054 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 616114 28754476 ~ 28780185 (+)
G592621 NA non-coding upstream 73522 27949103 ~ 27949381 (+)
G592606 NA non-coding upstream 100451 27922219 ~ 27922452 (+)
G592601 NA non-coding upstream 105912 27916766 ~ 27916991 (+)
G592599 NA non-coding upstream 107079 27915622 ~ 27915824 (+)
G592598 NA non-coding upstream 107440 27915144 ~ 27915463 (+)
G592699 NA non-coding downstream 31184 28169546 ~ 28172955 (+)
G592990 NA non-coding downstream 416368 28554730 ~ 28555209 (+)
G592993 NA non-coding downstream 420323 28558685 ~ 28559022 (+)
G593005 NA non-coding downstream 428468 28566830 ~ 28567405 (+)
G593006 NA non-coding downstream 429736 28568098 ~ 28578328 (+)
G592445 lig4 other upstream 315609 27703583 ~ 27707294 (+)
G592134 NA other upstream 539107 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1444970 26577407 ~ 26577933 (+)
G590936 gart other upstream 1469361 26552554 ~ 26553542 (+)
G593144 NA other downstream 696847 28835209 ~ 28841083 (+)
G593171 NA other downstream 753801 28892163 ~ 28892425 (+)
G593283 NA other downstream 921336 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 1191310 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 1389665 29528027 ~ 29528910 (+)

Expression


Co-expression Network