G592699


Basic Information

Item Value
gene id G592699
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28169546 ~ 28172955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU675651
tgttctccccactgtatgtattcacccactttgttatgaagcccctaaataagatctggtgcaaccaattactttcagaagtcacataattagttaaaaaaagtccacctgtgtgcaatctaagtgtcatatgatctcagtacatacacacctgttctgaaaggccccagagtctgcaacaccactaagcaaggggcaccaccaagcaagctgcACTATGaataccaaggagctctccaaacaggtcaggggcacatttgtggagaagtacagatcagggttgggttataaaaaatatcggaatctttgaacatcccacggagcaccattaactttgtcgagatcagtgtcccttccacgggacggttgagctaacgtaggctaatgcgataagcatgaggttgtaagtaacacaAAAATGAGTTtttaaaactggttaaatcacggctgtgactataacagagcgtgtgtttcatcgaaaagcgctataaaaactggtcactgaaaactgaaaaaaatatccatgcgccacttgcatgtattgtttaaggggcaccaaattaaataggaccgagattgcaattcctacagcttccacacgatatagccaaaaacgtcattttcattgacaaaaatcctttgtgtcatgacaaatagatccttcattccgtccagcatacagcaatcgattttggaaaagagaaaaagggacattgttttcttgagtagctgctattgaatacagatcgcccagtgatcaatttgatcgcttattcacgtttacaaatacctaaagttgggttacaaaagtaggttgaagtgttttgtcaaagaatataggcaacttatataatttttaaaaatgacgttgcgtgttggaagagagcttttttcctgaaccagacaggctatacaaatggatattttgggcatacatggacggatttaatcggaaaaaagacccaattgtgatgtttatggaacatataggagtgccaacaaagaatatcatcaaaggtaatgaatgttttatattttatttctgcgttttgtgtagcgccggctacgctattttgtttacgtccccttcaggtatattggggtgttgcatgctatcagataatagcttctcatgctttcgccgaaaagcattttaaaaatctgacttgttggctagattcacaacgagtgtagctttaattcgataccctgcatgtgtgttttaatgaacgtttgagttttaacgagtacatttagcatttagcgtagcgcatttgcatttccaggtgcctagttgagacgtctgcgtctcaagtaggatcatattttgcatcttcaaagtggtaggcatgttgtgtaaatcaaatgatacaaatcccTGAAGAATCTATTTTAATTACAGGGTGTAAGGCAACAGAATAGGATAAATGCTAagcggggtgaatactttcacaagccactgtattgggggtggcaggcagcctagtggttagatcggtgcgcaagtaactgaaaggttgcaggaTTGAATCCCCAAAcctacaaggtaaaaatctgccattaacccactgttccctggtaggccgtcactgtaaataagaatgtgttcttagctgacttgcctagttaaatattataataataatgaagTCGTAGGAGAAAAACTGGCAAATAGACACACTTAAAATATTATTTTGTTATGTGGATTTATAGGAATTCAGAGGGAAATTACAAAATGCACTTTATATTGACAAGAGACATCTTGAGATTAACCTACATGAACAAAAGCAAACAAAATTTGATATAGGAACTAGAAAAATGCTCAGCTTTTGAAAGGCAATGATGTTTTCTATGCAACTCAAGTTTTTGAAATGTCTCAAATGTTATTCTAAATTTCAATAGACTACATGCCATCTAAATTGCAGTattgtttttgtaaaaaaaaaaaacattgtaccATGCTGTAAATGATTAGTTATTCCTGTACAGGGAGACAAGGTGTTGTCATTTTGTAGGCCGAGTCTGACTGCCTGGTTCTAATCAAATTTCACCGATGTTTTCACAGTGATTATTTTAGATAGCTACAATAAGGTCTGTGTAGCATGTAGGTGTACTGACTAGCTATTGTTCTGAGGTGATGTCAATCAATCTTTGACTAAAAATAAAGACTAAAAACCTCTTAAAGATATTAATTTGGTTAAAAAAACACATTGTAATTAGTTGGCCTAAGTCTTACACAGACCTTTTTATCGCTATAAAAAATCTATCTTGTGGGAAAATGGATGGGGGCAAATGGCAGCAAATCACTTCTTTGCTTTGTGTACTACAAAATGACACCGGCACACCTCAGCACTCTATTGCACTGAAATGTGGTATGTTTTATTTTCTTAACTTTTAAAAAGACAGGTTGACACCCTCAGTTATTTTGGAAATGCACGACCTCTGTTTGTCACTTCCACTAAATGGTACTTGTCTTTAGGATGTTACCAATTACCTGAAGTTGAACTGATTTCAAGTAAGGAAAGTGCTTATTCTAGAAACCACTGGTTTGAATGCATTTGCAACTCTTCAAGGCGCTATATGGTGGCATTGGTTAACACCATACATGCCTCACCAGTACCATACTTGACCCAAAATTAACCCACATACTACAGGTGTCATCTGTACTATAATCATCATTTCATTTAAGAAACATTTTCATTGCCATCCATTATGAATGTTGATCATTAAATATCTTCTTACTGAAATGTCCAAGCAGTGTGTTTGTATTCCCAAAGTctgattgtcacgccctgaccttagagatcctgtttatgtctttattttggtttggtcagggtgtgagttggggtgggtattctatattctattatttgtatttctatgttttggccgggtagggttctcaatcagggacagctgtctagcgttgtctctgattgagaaccatacttaggtagcctttttttcCACCTGTCTTTTTGGGAAGTTGACTTTTGTTTAGCCTCAGCCTTTAGcttcacatttttttttgtgtagtgtttgttgtttttgttcttgtTCTGCGTCTTTtccaaataaagagaaaatgtatgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU675651 True 3098 lncRNA 0.38 2 28169546 28172955

Neighbor

gene id symbol gene type direction distance location
LOC100653476 LOC106575134 coding upstream 1345 28145536 ~ 28168201 (+)
plekha3 LOC106575131 coding upstream 295025 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 614791 27505909 ~ 27555139 (+)
LOC110527592 LOC106575150 coding upstream 686966 27458694 ~ 27482580 (+)
LOC118965273 NA coding upstream 1574395 26585519 ~ 26595151 (+)
LOC118965275 LOC106575153 coding downstream 48670 28221625 ~ 28258442 (+)
LOC110527602 LOC105007064 coding downstream 133312 28306267 ~ 28368030 (+)
mtx2 mtx2 coding downstream 493461 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 581521 28754476 ~ 28780185 (+)
LOC110527622 LOC106564406 coding downstream 739685 28912640 ~ 28921397 (+)
G592684 NA non-coding upstream 31184 28022903 ~ 28138362 (+)
G592746 NA non-coding upstream 45864 28120990 ~ 28123682 (+)
G592621 NA non-coding upstream 220165 27949103 ~ 27949381 (+)
G592606 NA non-coding upstream 247094 27922219 ~ 27922452 (+)
G592601 NA non-coding upstream 252555 27916766 ~ 27916991 (+)
G592990 NA non-coding downstream 381775 28554730 ~ 28555209 (+)
G592993 NA non-coding downstream 385730 28558685 ~ 28559022 (+)
G593005 NA non-coding downstream 393875 28566830 ~ 28567405 (+)
G593006 NA non-coding downstream 395143 28568098 ~ 28578328 (+)
G593007 NA non-coding downstream 400983 28573938 ~ 28582766 (+)
G592445 lig4 other upstream 462252 27703583 ~ 27707294 (+)
G592134 NA other upstream 685750 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1591613 26577407 ~ 26577933 (+)
G590936 gart other upstream 1616004 26552554 ~ 26553542 (+)
G593144 NA other downstream 662254 28835209 ~ 28841083 (+)
G593171 NA other downstream 719208 28892163 ~ 28892425 (+)
G593283 NA other downstream 886743 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 1156717 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 1355072 29528027 ~ 29528910 (+)

Expression


Co-expression Network