XLOC_025276


Basic Information

Item Value
gene id XLOC_025276
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22157933 ~ 22162482 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052648
CGCAACTAGGCTACACCTGACCAAACGATGTTGCATCCGTTTGTTTCACGAGAAAACGAGACCAAAAGTAAAACAAAGGACAGGTAAAGCAGTTTAATACGGACTTTATTTCCAAATTCACGTTTACAGCAAGGAGTATCAGTGTAAaccaattaataaaacacattacgaTAAGGACAATCACAACTGTCAAGCTAGAATGAGGAACCGCGATGAGAAGAGCAGAGGCGGGAAATGAAACTGAGGAGAAAAGTAGCCGGAAAGCTCACAGGCCTTGTTTAGCAAGGGAGGCCGAGACCTGATCAGCCAGTGTGGACAGTTGTGGGGAGTCGGTCATGTTGAGGCTGCCGGAGGAAGACACGTTGCTGAGGCGGCGAGGGGATCCGTCCGTGGAAATGTCAGGGGACTTGCAGACGATGTCAGCACCGTGGTCAGTGCGCGCTTTGGCTTGATCACGGAAATTTAGCTTGTGGCTCTCAATCTGATGGGAGAAAAGGTGGAATTTGTATTAAGTTTGATGAACATCAACagattttgcaaacaaaaaaaaaacaaataaatcaggTGAATTCAGGACAGTTGTCACTCTAAATCAGAAAAAATGAAGCAtcccaccaagcaattttgttTATGGATGTTAAATGTggatgtcttggctaaaacaaagctacAGTAAAGTACTCTGTTTTGACTATTGTTTGACATGTTAGATTTTCAATGAGAGCCCAGATTTAGACTTCTTTTAGCCAAGGcatctatgtttagacgtctatttgAATTCttttagacataaaaaaaaaatgcttgcttggATTATATATGATACATTAACAACATTATATATGATACATTATCTatgataaattaacaaaagaaaattgtTCTTTAAAAAACGGACTGCGTCCTGACCGCAGTCACTATTCTAtgttgtactgtaaataaatctaaataat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052648 True 953 lncRNA 0.40 2 22157933 22162482

Neighbor

gene id symbol gene type direction distance location
XLOC_025275 cdc27 coding upstream 2401 22035863 ~ 22155532 (+)
XLOC_025274 NA coding upstream 160375 21929928 ~ 21997558 (+)
XLOC_025273 crhr1 coding upstream 268317 21669545 ~ 21889616 (+)
XLOC_025272 NA coding upstream 560025 21378996 ~ 21597908 (+)
XLOC_025271 NA coding upstream 837448 21312584 ~ 21320485 (+)
XLOC_025277 scn4ab coding downstream 79787 22242269 ~ 22316844 (+)
XLOC_025278 gh1 coding downstream 165256 22327738 ~ 22332913 (+)
XLOC_025279 ifnphi3 coding downstream 171530 22334012 ~ 22380787 (+)
XLOC_025280 zgc:103564 coding downstream 172548 22335030 ~ 22341106 (+)
XLOC_025281 arhgap27l coding downstream 213114 22375596 ~ 22422169 (+)
XLOC_025429 BX649540.1 misc downstream 8086257 30248739 ~ 30249036 (+)
XLOC_025270 NA non-coding upstream 906126 21245897 ~ 21251807 (+)
XLOC_025266 NA non-coding upstream 1014562 21137095 ~ 21143371 (+)
XLOC_025283 BX649557.1 non-coding downstream 406505 22568987 ~ 22569106 (+)
XLOC_025285 NA non-coding downstream 683854 22846336 ~ 22848196 (+)
XLOC_025286 BX322574.1 non-coding downstream 692191 22854673 ~ 22880447 (+)
XLOC_025293 NA non-coding downstream 933960 23096442 ~ 23213329 (+)
XLOC_025296 NA non-coding downstream 1243989 23406471 ~ 23411521 (+)

Expression


Co-expression Network