G593028


Basic Information

Item Value
gene id G593028
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28610618 ~ 28618334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676018
ggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgcttccagtacagcgcccttaaccactgcgccacccgggaggccctcaaattcttattttcaatgacggcctaggagcagtgggttaactgcctgttcaggggaacagaacgacagatttgtcagctcggggatttgctctgggatttgaacttgcaacctttcggttactagcccaacactctaaccactaggctaccctgccgccccaatatctACTAATGGCAATATTTACCTTGCATAGCCGATGATAAGGCTGCCGAACACAGTCCCGATTCCAGCACCAGAACCAGCCACTCCAACTGTGGCAGCTCCAGCGCCGATGAACTTGGCTGCTGTGTCAATGTCTCTGCTCACAGCACTAGTCTGGAAACCCCGCAGTGCTACCTGAGAAAAGGCACTCTGTGGCACAAAGTCAGTGCTAGCCTGGGAGCAACAAATAAAAAGTC
>TU676020
CAGGCCTTGTGCCAGGCACCATAATAGTAATTTATTACACATGTAGGCTGTACTTGGCAGCTATAGCGTAATTACATACATAGCACATAAGTAATTAAACAGTTAAAAATCAAGATGGGAGCAGAAGCAGTTTGTTTTTGGTAGTGTCAATGGGCTGAGCGGTGGGAGGCAGCATTCACAGGAATGAAAAATTAAGGTCACAGCAAGGGGGGGGGTCATTGGTCAGAATCAGACAGGTCCAAAGCCATTAGCAGCACACTGCACTGTCCACTCACATACAACCAGTTGCATTATTCCCTCCCCCCTCTTAAAGCATCCTCCTCGCATTAGTACCAAGTCAACTATGCTCCAACAAAGGCTATCCCACTATTACAAAGCAATGCATAGTGTGAGAAATAATGGAGGGTCAATTCAAAAGCCCAGGCACTGCACAGGATCCAAACTCCGTGTTTTGTATTCAATATAGAAAGTGAAATTCAATGGACCCAAACTGTTTCAATTTAGCATGCAGATTAAATTAAATAGCCAATGTTAGATCATCTCTGCTATGAATGTTTTAACTACCGGTATCAATAAATAATATCTGCTCATGACAACCAAAATGCTTACTTAGCGCTATGAAGTTTATAATCTCAAAATGCAAGAGATTGGAAGTGTCTATTCAATTGTAATCCAACAGCTGAACTAAATCTCACCCCAAATCTAAAATATCTTCAAGATCAAGCGAAATGTATGGCTTTTGGGGTGAAGTTTGCCCTAGGTAAAGAGCTCAGATCAGCTTCCCCAATCctaatgcaaaactgacccaataTCAGCATCTATTGGCAACTTTAACATATATTAAATGGctgttctaaaaaaaaaaaaaatgcaaagcAGAGTCAAGTTGATCATTTTTCATGGAATAgcaaaagaggacattgtattacACCAGTGAAAGATGACTTCAATATTTATTACAATTAAGAAAAGCATATGATAACCAAAAGTACAGTAAAAATGTACTTAAACTCACTTGATTGCAATCAACCTGCAGTTAACATACCTATATGCTTTGTTTTGAGCTGAAGGGCACACACTAGAGAAATGCATTTGTTAATCCAAAATCTGGTGTTCCTTTGAAAATGTTTTGCAGGGAAGTGGGGCTACACACAAAATAACTAAACCATTTTAAAGTGAAATACATGCATTTAATTCTGTAATTGGTTACATTTTTACAATACATGCCTTTTCTTTTGTCAGCCTTCAACAAAAACTTGGAAAATGTACAATTCTATGACCAACACTGAACAATTTGGGTTGCTCGAGTAAAATAGGTAGCCACAGCTGTGGTTTCAAAATCATGATCACCATCTGCAGTAGACCTATTTACATGGCAAACAGGATCAGGAAAGCAACCATCAAGCAGAACAGACCCATGGCTTCAGACAGGGCAAATCCCAGGATAGCATAGGAGAAAAGCTGCTGCTTTAGGGAAGGGTTCTTGCATAGCCGATGATAAGGCTGCCGAACACAGTCCCGATTCCAGCACCAGAACCAGCCACTCCAACTGTGGCAGCTCCAGCGCCGATGAACTTGGCTGCTGTGTCAATGTCTCTGCTCACAGCACTAGTCTGGAAACCCCGCAGTGCTACCTGAGAAAAGGCACTCTGTGGCACAAAGTCAGTGCTAGCCTGGGAGCAACAAATAAAAAGTC
>TU676017
TGAAAGATGACTTCAATATTTATTACAATTAAGAAAAGCATATGATAACCAAAAGTACAGTAAAAATGTACTTAAACTCACTTGATTGCAATCAACCTGCAGTTAACATACCTATATGCTTTGTTTTGAGCTGAAGGGCACACACTAGAGAAATGCATTTGTTAATCCAAAATCTGGTGTTCCTTTGAAAATGTTTTGCAGGGAAGTGGGGCTACACACAAAATAACTAAACCATTTTAAAGTGAAATACATGCATTTAATTCTGTAATTGGTTACATTTTTACAATACATGCCTTTTCTTTTGTCAGCCTTCAACAAAAACTTGGAAAATGTACAATTCTATGACCAACACTGAACAATTTGGGTTGCTCGAGTAAAATAGGTAGCCACAGCTGTGGTTTCAAAATCATGATCACCATCTGCAGTAGACCTATTTACATGGCAAACAGGATCAGGAAAGCAACCATCAAGCAGAACAGACCCATGGCTTCAGACAGGGCAAATCCCAGGATAGCATAGGAGAAAAGCTGCTGCTTTAGGGAAGGGTTCCTGCATAGCCGATGATAAGGCTGCCGAACACAGTCCCGATTCCAGCACCAGAACCAGCCACTCCAACTGTGGCAGCTCCAGCGCCGATGAACTTGGCTGCTGTGTCAATGTCTCTGCTCACAGCACTAGTCTGGAAACCCCGCAGTGCTACCTGAGAAAAGGCACTCTGTGGCACAAAGTCAGTGCTAGCCTGGGAGCAACAAATAAAAAGTC
>TU676019
TGAAAGATGACTTCAATATTTATTACAATTAAGAAAAGCATATGATAACCAAAAGTACAGTAAAAATGTACTTAAACTCACTTGATTGCAATCAACCTGCAGTTAACATACCTATATGCTTTGTTTTGAGCTGAAGGGCACACACTAGAGAAATGCATTTGTTAATCCAAAATCTGGTGTTCCTTTGAAAATGTTTTGCAGGGAAGTGGGGCTACACACAAAATAACTAAACCATTTTAAAGTGAAATACATGCATTTAATTCTGTAATTGGTTACATTTTTACAATACATGCCTTTTCTTTTGTCAGCCTTCAACAAAAACTTGGAAAATGTACAATTCTATGACCAACACTGAACAATTTGGGTTGCTCGAGTAAAATAGGTAGCCACAGCTGTGGTTTCAAAATCATGATCACCATCTGCAGTAGACCTATTTACATGGCAAACAGGATCAGGAAAGCAACCATCAAGCAGAACAGACCCATGGCTTCAGACAGGGCAAATCCCAGGATAGCATAGGAGAAAAGCTGCTGCTTTAGGGAAGGGTTCCAGGCTGCCGAACACAGTCCCGATTCCAGCACCAGAACCAGCCACTCCAACTGTGGCAGCTCCAGCGCCGATGAACTTGGCTGCTGTGTCAATGTCTCTGCTCACAGCACTAGTCTGGAAACCCCGCAGTGCTACCTGAGAAAAGGCACTCTGTGGCACAAAGTCAGTGCTAGCCTGGGAGCAACAAATAAAAAGTC

Function

NR:

description
ATP synthase F(0) complex subunit C3, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676018 False 558 lncRNA 0.51 2 28610618 28618334
TU676020 False 1696 lncRNA 0.40 2 28616247 28618334
TU676017 False 762 lncRNA 0.42 2 28617181 28618334
TU676019 True 746 lncRNA 0.42 2 28617181 28618334

Neighbor

gene id symbol gene type direction distance location
LOC110527602 LOC105007064 coding upstream 242588 28306267 ~ 28368030 (+)
LOC118965275 LOC106575153 coding upstream 352176 28221625 ~ 28258442 (+)
LOC100653476 LOC106575134 coding upstream 442417 28145536 ~ 28168201 (+)
plekha3 LOC106575131 coding upstream 736097 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 1055863 27505909 ~ 27555139 (+)
mtx2 mtx2 coding downstream 48082 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 136142 28754476 ~ 28780185 (+)
LOC110527622 LOC106564406 coding downstream 294306 28912640 ~ 28921397 (+)
LOC118965279 LOC106595049 coding downstream 357149 28975483 ~ 28977613 (+)
LOC118965280 NA coding downstream 369012 28987346 ~ 28992237 (+)
G593012 LOC100196534 non-coding upstream 23174 28586298 ~ 28587444 (+)
G593007 NA non-coding upstream 27852 28573938 ~ 28582766 (+)
G593006 NA non-coding upstream 32290 28568098 ~ 28578328 (+)
G593005 NA non-coding upstream 43213 28566830 ~ 28567405 (+)
G592993 NA non-coding upstream 51596 28558685 ~ 28559022 (+)
G593046 NA non-coding downstream 28922 28647256 ~ 28647456 (+)
G593051 NA non-coding downstream 35889 28654223 ~ 28654854 (+)
G593059 NA non-coding downstream 69876 28688210 ~ 28688881 (+)
G593093 NA non-coding downstream 111073 28729407 ~ 28729613 (+)
G593111 NA non-coding downstream 126287 28744621 ~ 28744909 (+)
G592445 lig4 other upstream 903324 27703583 ~ 27707294 (+)
G592134 NA other upstream 1126822 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 2032685 26577407 ~ 26577933 (+)
G590936 gart other upstream 2057076 26552554 ~ 26553542 (+)
G593144 NA other downstream 216875 28835209 ~ 28841083 (+)
G593171 NA other downstream 273829 28892163 ~ 28892425 (+)
G593283 NA other downstream 441364 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 711338 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 909693 29528027 ~ 29528910 (+)

Expression


Co-expression Network