G593163


Basic Information

Item Value
gene id G593163
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28876643 ~ 28877049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676158
CCTTTGTTTAGTGACCCCTAAATGTAAATGCATCACTCCAAAATGTAGCTGTCTGTCTTCTGCAGATTGTCCTTTAACCAGTGAGGAAaagatatctcccatttccatgtgtttttttagttgtgttagtttcaacagaacgtacaacctgatttcccccctaattgatatcagtgatttattgctaCTTGTCAAAACAACAGTGTTTTTGGTGTTTGTGCAGTTAAGGTGAAGGTTTAAAAAAACAAGTAATATGATTATTGTGGCAGATGTTTGTGTACATAGCACATTTTTTGTTTAGGTTTTCATTATATCACAAACtttctgcatattggttattgatttaAACAAGTTAAAACTGTGTTTTGACGTTGGGCTATCCCACCGAGCAAAATGTCATAATAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676158 True 407 lncRNA 0.34 1 28876643 28877049

Neighbor

gene id symbol gene type direction distance location
LOC110527611 rbm45 coding upstream 96458 28754476 ~ 28780185 (+)
mtx2 mtx2 coding upstream 189850 28666416 ~ 28686793 (+)
LOC110527602 LOC105007064 coding upstream 508613 28306267 ~ 28368030 (+)
LOC118965275 LOC106575153 coding upstream 618201 28221625 ~ 28258442 (+)
LOC100653476 LOC106575134 coding upstream 708442 28145536 ~ 28168201 (+)
LOC110527622 LOC106564406 coding downstream 35591 28912640 ~ 28921397 (+)
LOC118965279 LOC106595049 coding downstream 98434 28975483 ~ 28977613 (+)
LOC118965280 NA coding downstream 110297 28987346 ~ 28992237 (+)
LOC110527630 NA coding downstream 133929 29010978 ~ 29013251 (+)
LOC110527620 NA coding downstream 149282 29026331 ~ 29035347 (+)
G593160 NA non-coding upstream 1606 28874696 ~ 28875037 (+)
G593158 NA non-coding upstream 4490 28871909 ~ 28872153 (+)
G593155 NA non-coding upstream 14009 28862365 ~ 28862634 (+)
G593100 NA non-coding upstream 15887 28860400 ~ 28860756 (+)
G593102 NA non-coding upstream 25249 28850881 ~ 28851394 (+)
G593170 LOC107661334 non-coding downstream 14773 28891822 ~ 28892071 (+)
G593224 NA non-coding downstream 71956 28949005 ~ 29041967 (+)
G593228 NA non-coding downstream 77039 28954088 ~ 28954871 (+)
G593188 NA non-coding downstream 102852 28979901 ~ 28980194 (+)
G593260 LOC106593246 non-coding downstream 142611 29019660 ~ 29024943 (+)
G593144 NA other upstream 35560 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1002222 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1169349 27703583 ~ 27707294 (+)
G592134 NA other upstream 1392847 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 2298710 26577407 ~ 26577933 (+)
G593171 NA other downstream 15114 28892163 ~ 28892425 (+)
G593283 NA other downstream 182649 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 452623 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 650978 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 1154910 30031959 ~ 30032621 (+)

Expression


Co-expression Network