G593260 (LOC106593246)


Basic Information

Item Value
gene id G593260
gene name LOC106593246
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29019660 ~ 29024943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676270
gttttattgacacatttcctttaaaaacagctcatacattttttacatcattgaTACACATAAAAACGGCAACAAAGCATAAAACACAGCATTTGAAAGTTACATTTAAATTTGTTAAAAAGTACATGTTGTTAAAACCAATGAAAACAACCATGAATAAAAGTACTTTCCTTGTAAAAACATCAAATCtgtaaaagccatttaaaatgtgtactaatgatctaacaaaggtaaaacatttttaagacatgaaaaaccatgttaaaaagtcactttgttaaaaggctgtcttCAGTCCCTTGTACAGGAGGGGGGTGAGTCTTTATCAAGCTCACCTCATCCTGCTCTTCTGAATAGATCATCGTCCCGTCCTTCGGGGCCCAGAGGAGATCCCTCCCCTAGGCGCATCGCCCTAGGCGCCGCAGCGCTGTCAGGCCGTGGCCGCCGGGACCTAGGGTGTTGTGGGGGACCCTTCGCCTGGGGTCGAGGCCCCCTTCCTTCCGTACCACCCCAGGGCTTCCGTGGCTACCATGGCCGCTGCCTGGGGGGTGGTCTCTACGTTTTTCGCTACCAGCAGGTTACGGGAGGACCACAGTGCTTCCTTCAGGCACGTGAGGGTGGGCCAGAGCTTGGTGAAGGCCTTCGATGGAATGGGCCTTCGGCCCACCCCATACAGCACGAGCTGAGGTGTTAGGTCCTCCCCTGCTGGCAGACACGAGGTGATCAGGGGGCCTGCTTCCTTCCCTGGCGGCTCTGCACTCCCAGAGCATGTGCCTCACCGACTCTTCTTGGCCGCAGCCTGGTCGGGGGCACGCGGATGTCCTCGCCATGCCCCGTGAGTGCATAACGGCCCTGACCGGGAGGATCTCGTGGGCGACCATCCAGGACAGGTCCCGATGCCGATTCAGGAGAGCAGGATGGGCCACGTTGCGCCAAACCGTTGTGGGCTCACCTATAGCGAGCCCGCGCACTGGACACACTGGTTCCCG

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110513786, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676270 True 989 lncRNA 0.53 2 29019660 29024943

Neighbor

gene id symbol gene type direction distance location
LOC110527630 NA coding upstream 6409 29010978 ~ 29013251 (+)
LOC118965280 NA coding upstream 27423 28987346 ~ 28992237 (+)
LOC118965279 LOC106595049 coding upstream 42047 28975483 ~ 28977613 (+)
LOC110527622 LOC106564406 coding upstream 98263 28912640 ~ 28921397 (+)
LOC110527611 rbm45 coding upstream 239475 28754476 ~ 28780185 (+)
LOC110527620 NA coding downstream 1388 29026331 ~ 29035347 (+)
LOC110527621 NA coding downstream 62168 29087111 ~ 29099411 (+)
LOC110527619 LOC106578599 coding downstream 304641 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 364674 29389617 ~ 29396184 (+)
LOC118965282 NA coding downstream 388927 29413870 ~ 29442670 (+)
G593188 NA non-coding upstream 39466 28979901 ~ 28980194 (+)
G593228 NA non-coding upstream 64789 28954088 ~ 28954871 (+)
G593170 LOC107661334 non-coding upstream 127589 28891822 ~ 28892071 (+)
G593163 NA non-coding upstream 142611 28876643 ~ 28877049 (+)
G593160 NA non-coding upstream 144623 28874696 ~ 28875037 (+)
G593274 NA non-coding downstream 19502 29044445 ~ 29059575 (+)
G593291 NA non-coding downstream 55648 29080591 ~ 29080798 (+)
G593295 NA non-coding downstream 59261 29084204 ~ 29084530 (+)
G593307 NA non-coding downstream 79292 29104235 ~ 29105025 (+)
G593171 NA other upstream 127235 28892163 ~ 28892425 (+)
G593144 NA other upstream 178577 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1145239 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1312366 27703583 ~ 27707294 (+)
G592134 NA other upstream 1535864 27483050 ~ 27483796 (+)
G593283 NA other downstream 34755 29059698 ~ 29064592 (+)
G593513 LOC106610831 other downstream 503084 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 1007016 30031959 ~ 30032621 (+)
G596168 NA other downstream 1878236 30903179 ~ 30903887 (+)

Expression


Co-expression Network