G593307


Basic Information

Item Value
gene id G593307
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29104235 ~ 29105025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676325
ggcagttaacccactgttcctaggccgtcattgaaaatatgaatttgttctttactgacttgcctagttaaataaaggtaaaattaaaataaaaaaataatatcaaAGAACAAATGTGTGTGCCTGAGGGGAAATTAACTTTCATACAGTCAAAAGGGGTGAGAAATTACACCAATATCAGTGGACAATTTGCACTAATGTAAATAAAAATAGATGATGGAACATATTCCCTTTTGCTTATGTGATGAACCCCTGTACCTGTACAcaaccaatctgtaaatagcacccgactaccccagtatctctacttgcacgtcatcatctgcacatctatcactctagtattaatgctaagttgtaattattttcgcctctagggccgatttattgccttactcttctacatttgcacacactacatAGATTTTTCgatttttcttttgtgttattgactgtacgtttgtttatgtgtaactgtgtcgttgtttgtgtcgcactgagaactaaatgagaacttgttctcaactggcctacctggttaaataaaaaataaaaaggggACATAAATATTTACCATCTAACCATTTTTTACCTCTCACTTCTCTGGCTGTAGAAGTGTTCTTCCTAACCAGTCCCTCAACTgctctctgactgagctccaccctcactgggtcttcagaggagaggaagactgaggagggatggaaggatgaatggatcagtcagtcaataaagtgtagagctgctgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676325 True 750 lncRNA 0.38 2 29104235 29105025

Neighbor

gene id symbol gene type direction distance location
LOC110527621 NA coding upstream 4824 29087111 ~ 29099411 (+)
LOC110527620 NA coding upstream 69629 29026331 ~ 29035347 (+)
LOC110527630 NA coding upstream 90984 29010978 ~ 29013251 (+)
LOC118965280 NA coding upstream 111998 28987346 ~ 28992237 (+)
LOC118965279 LOC106595049 coding upstream 126622 28975483 ~ 28977613 (+)
LOC110527619 LOC106578599 coding downstream 224559 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 284592 29389617 ~ 29396184 (+)
LOC118965282 NA coding downstream 308845 29413870 ~ 29442670 (+)
LOC110527623 NA coding downstream 458784 29563350 ~ 29636769 (+)
LOC110527616 NA coding downstream 581391 29686416 ~ 29703056 (+)
G593295 NA non-coding upstream 19705 29084204 ~ 29084530 (+)
G593291 NA non-coding upstream 23437 29080591 ~ 29080798 (+)
G593274 NA non-coding upstream 44660 29044445 ~ 29059575 (+)
G593260 LOC106593246 non-coding upstream 79292 29019660 ~ 29024943 (+)
G593317 NA non-coding downstream 10881 29115906 ~ 29116723 (+)
G593322 NA non-coding downstream 27972 29132997 ~ 29133869 (+)
G593323 NA non-coding downstream 29338 29134363 ~ 29134915 (+)
G593324 NA non-coding downstream 43547 29148572 ~ 29150344 (+)
G593329 NA non-coding downstream 49061 29154086 ~ 29154404 (+)
G593283 NA other upstream 39643 29059698 ~ 29064592 (+)
G593171 NA other upstream 211810 28892163 ~ 28892425 (+)
G593144 NA other upstream 263152 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1229814 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1396941 27703583 ~ 27707294 (+)
G593513 LOC106610831 other downstream 423002 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 926934 30031959 ~ 30032621 (+)
G596168 NA other downstream 1798154 30903179 ~ 30903887 (+)
G596297 NA other downstream 1976696 31081721 ~ 31082290 (+)

Expression


Co-expression Network