G593340


Basic Information

Item Value
gene id G593340
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29191728 ~ 29192387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676369
tttttttttacaattaggAAATAACATGTTTTTCTCGTACTCGTtacctcagccagcattgtgaatggtgtCTGATGCAGTGACCTACTAGACCAGGGCAGTAGATCTAATACTTATGTGTTTTTAGTCATGCATGAAAGGTCTGTGTTGGTTCTGTGCTTATAAGTTACATCTCTGGCCATGCTGgaagggtctgaatcaaacctaATGTCCAATGGGATTTATCTGTTTGATCCAAATGTTTGTTTCAGTTTTCAGTAGTTGAATCCTTTGACGTAATGTTGATTTTAACATTTTTCATTTTCAACAAATGCACTGGGTTGGTTGAAAAGTGATACTAAACTTACATACCATGCACTATATTGACATAGTGGAAGATTTAGTGAATTTATACTGTTTTTCATACTAAGATGGACCAAGATATGTGTTGCTTTTGCACATATTTGTTCATTGGTTTAGCAAGAGTTTGTTGATTGGTCAGTCATTGGGTTCATATGTTTTAcaatatgttcaaatcaaatcaagctttttATACaccacatttcagacatggaggCAACACAATGACTTCACaggaaaaaatgtataaaaaacaatgaaaataaacagaCATATTTACTACACAATATAAGAGGATAAAAAACAGAAGAATAACAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676369 True 660 lncRNA 0.33 1 29191728 29192387

Neighbor

gene id symbol gene type direction distance location
LOC110527621 NA coding upstream 92317 29087111 ~ 29099411 (+)
LOC110527620 NA coding upstream 157122 29026331 ~ 29035347 (+)
LOC110527630 NA coding upstream 178477 29010978 ~ 29013251 (+)
LOC118965280 NA coding upstream 199491 28987346 ~ 28992237 (+)
LOC118965279 LOC106595049 coding upstream 214115 28975483 ~ 28977613 (+)
LOC110527619 LOC106578599 coding downstream 137197 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 197230 29389617 ~ 29396184 (+)
LOC118965282 NA coding downstream 221483 29413870 ~ 29442670 (+)
LOC110527623 NA coding downstream 371422 29563350 ~ 29636769 (+)
LOC110527616 NA coding downstream 494029 29686416 ~ 29703056 (+)
G593337 NA non-coding upstream 9532 29176592 ~ 29182196 (+)
G593336 NA non-coding upstream 10103 29174411 ~ 29181625 (+)
G593334 NA non-coding upstream 18276 29169235 ~ 29173452 (+)
G593335 NA non-coding upstream 20021 29170354 ~ 29171707 (+)
G593330 NA non-coding upstream 30031 29161195 ~ 29161697 (+)
G593341 NA non-coding downstream 104 29192491 ~ 29193079 (+)
G593342 NA non-coding downstream 757 29193144 ~ 29193747 (+)
G593343 NA non-coding downstream 1525 29193912 ~ 29194307 (+)
G593344 NA non-coding downstream 3226 29195613 ~ 29279455 (+)
G593354 NA non-coding downstream 44655 29237042 ~ 29255486 (+)
G593283 NA other upstream 127136 29059698 ~ 29064592 (+)
G593171 NA other upstream 299303 28892163 ~ 28892425 (+)
G593144 NA other upstream 350645 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1317307 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1484434 27703583 ~ 27707294 (+)
G593513 LOC106610831 other downstream 335640 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 839572 30031959 ~ 30032621 (+)
G596168 NA other downstream 1710792 30903179 ~ 30903887 (+)
G596297 NA other downstream 1889334 31081721 ~ 31082290 (+)

Expression


Co-expression Network