G593343


Basic Information

Item Value
gene id G593343
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29193912 ~ 29194307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676372
ttctagaactctcgtcttcctaaaactcactagcttctagaactctcgtccccTTGAAACGAGCCCAAACAAAACTCATCTCCAATACGGAAAAACATGCAgtcaaaataaattgtgatcCATGGCAACGCACTGGCTAAACACAAAACTTTTTGACTACACCCCCTGAAGACAATCAACAACCAAGTTGTCCTTACCACTGATTTCAAGAGGAAACTCCTGCAATATCCGTAGTAACTTTCCACCTCACTGCagagcttctctctcttttcagggttcactAGATAGGCATGTTGTTGGATCGGGGCCCAGTCCCCAATATTCATTCTCTAGTACATTTGGTTTGGCACATCTGAGAATGAACAATGATATTCTAAAAGCAGAATAACAATGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676372 True 396 lncRNA 0.42 1 29193912 29194307

Neighbor

gene id symbol gene type direction distance location
LOC110527621 NA coding upstream 94501 29087111 ~ 29099411 (+)
LOC110527620 NA coding upstream 159306 29026331 ~ 29035347 (+)
LOC110527630 NA coding upstream 180661 29010978 ~ 29013251 (+)
LOC118965280 NA coding upstream 201675 28987346 ~ 28992237 (+)
LOC118965279 LOC106595049 coding upstream 216299 28975483 ~ 28977613 (+)
LOC110527619 LOC106578599 coding downstream 135277 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 195310 29389617 ~ 29396184 (+)
LOC118965282 NA coding downstream 219563 29413870 ~ 29442670 (+)
LOC110527623 NA coding downstream 369502 29563350 ~ 29636769 (+)
LOC110527616 NA coding downstream 492109 29686416 ~ 29703056 (+)
G593342 NA non-coding upstream 165 29193144 ~ 29193747 (+)
G593341 NA non-coding upstream 833 29192491 ~ 29193079 (+)
G593340 NA non-coding upstream 1525 29191728 ~ 29192387 (+)
G593337 NA non-coding upstream 11716 29176592 ~ 29182196 (+)
G593336 NA non-coding upstream 12287 29174411 ~ 29181625 (+)
G593344 NA non-coding downstream 1306 29195613 ~ 29279455 (+)
G593354 NA non-coding downstream 42735 29237042 ~ 29255486 (+)
G593358 NA non-coding downstream 91130 29285437 ~ 29285642 (+)
G593365 NA non-coding downstream 101810 29296117 ~ 29296354 (+)
G593366 NA non-coding downstream 102821 29297128 ~ 29297427 (+)
G593283 NA other upstream 129320 29059698 ~ 29064592 (+)
G593171 NA other upstream 301487 28892163 ~ 28892425 (+)
G593144 NA other upstream 352829 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1319491 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1486618 27703583 ~ 27707294 (+)
G593513 LOC106610831 other downstream 333720 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 837652 30031959 ~ 30032621 (+)
G596168 NA other downstream 1708872 30903179 ~ 30903887 (+)
G596297 NA other downstream 1887414 31081721 ~ 31082290 (+)

Expression


Co-expression Network