G593344


Basic Information

Item Value
gene id G593344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29195613 ~ 29279455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676373
tgctagatgtagtaaaactcttcccacattcatcacagctaaaaggtttctctcctgtgtgtgttctctggtgtagtgTCAGATTGCTAGATGTagcaaaactctttccacattcatcacagctataaggtttctctcctgtgtgtgttctctggtgtgatatcaggctggttgactgagtaaaactcttcccacattgagtacagctataaggtttctctcctgtgtgtattctttggTGTGAAATCAGGTTGCttagctgagtaaaactcttcccacattgagtacagctatatggtttctctcctgtatgtattctctgATGTACAGTCAGAAGACCAGATGAAACAAAACtattcccacattgatcacagctataaggtttctctcctgtgtgtgttctctggtgtacaatAAGACGGCTAGATGTAACAAAACTCTtctcacattgatcacagctataaggtttctctcctgtgtgtgttctctggtgtacaatAAGACTGCTAGATGAAGTAAAACTCTTCcgacattgatcacagctataaggtttctctcctgtgtgtgttctctggtgtgataccaGGTTGCTTGAccgagtaaaactcttcccacattgattacagctataagatttatctcctgtgtgttttctctggtgtACGATCCGATGAcgagatgtagtaaaactcttcccacattgatcacagctataaggtttatctcctgtgtgttttctctggtgtGATAACAGGTTgcttgactgagtaaaactcttcccacattgagtacagctgtacggtttctctcctgtgtgtgttctctggtgtatcaTCAGATGACTAGAcatagtaaaactcttcccacattgatcacagctgtaaagtttctctccagtgtgaattctCATGTGTACTTTTAGTGATTTTAATCTTAAGTAACTCTTCCCACAATCAAAACAGTGGTGagatttctctccagtgtgtactcgctggtgtattttaagttctgatgaagatttgcaacgtttcccacagtcagagcagcaatgagatttcttccctgtgggtctcCTATGGTGTTTCTTGAGGAGTTCTGATGTGGAGACACTCTTCTCTGCCTCATCAGcatcatgatgttgttgaggctccccaga

Function

NR:

description
zinc finger protein 180-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676373 True 1156 lncRNA 0.42 3 29195613 29279455

Neighbor

gene id symbol gene type direction distance location
LOC110527621 NA coding upstream 96202 29087111 ~ 29099411 (+)
LOC110527620 NA coding upstream 161007 29026331 ~ 29035347 (+)
LOC110527630 NA coding upstream 182362 29010978 ~ 29013251 (+)
LOC118965280 NA coding upstream 203376 28987346 ~ 28992237 (+)
LOC118965279 LOC106595049 coding upstream 218000 28975483 ~ 28977613 (+)
LOC110527619 LOC106578599 coding downstream 50129 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 110162 29389617 ~ 29396184 (+)
LOC118965282 NA coding downstream 134415 29413870 ~ 29442670 (+)
LOC110527623 NA coding downstream 284354 29563350 ~ 29636769 (+)
LOC110527616 NA coding downstream 406961 29686416 ~ 29703056 (+)
G593343 NA non-coding upstream 1306 29193912 ~ 29194307 (+)
G593342 NA non-coding upstream 1866 29193144 ~ 29193747 (+)
G593341 NA non-coding upstream 2534 29192491 ~ 29193079 (+)
G593340 NA non-coding upstream 3226 29191728 ~ 29192387 (+)
G593337 NA non-coding upstream 13417 29176592 ~ 29182196 (+)
G593358 NA non-coding downstream 5982 29285437 ~ 29285642 (+)
G593365 NA non-coding downstream 16662 29296117 ~ 29296354 (+)
G593366 NA non-coding downstream 17673 29297128 ~ 29297427 (+)
G593367 NA non-coding downstream 18521 29297976 ~ 29298672 (+)
G593370 NA non-coding downstream 22340 29301795 ~ 29308953 (+)
G593283 NA other upstream 131021 29059698 ~ 29064592 (+)
G593171 NA other upstream 303188 28892163 ~ 28892425 (+)
G593144 NA other upstream 354530 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1321192 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1488319 27703583 ~ 27707294 (+)
G593513 LOC106610831 other downstream 248572 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 752504 30031959 ~ 30032621 (+)
G596168 NA other downstream 1623724 30903179 ~ 30903887 (+)
G596297 NA other downstream 1802266 31081721 ~ 31082290 (+)

Expression


Co-expression Network