XLOC_025285


Basic Information

Item Value
gene id XLOC_025285
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22846336 ~ 22848196 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052336
GCACCAAATTGgccaatagctggtgtgttgtgagtgcactggcgctgttgtcctgtggctgccgtcgcatcatccaagtggatgctgcacactggtggtggtgtggagaaaccACCCATCCCCCCAAATGCTGAGAGATGAAGCAGATAAGTGGTGTAGCAGAGGGAGAGAAATCTCACACACCGTTCCAAAGGTAAGTTTCAGATCTTCAGTATTACACCAACAAAGCTTTAGTCACTTCccttaagcaggtgtgtttgcatCCACAGGAGAAGAAAGACATCCACGGAGGAGAAGAAAAGGAAGAGGGAGAGATGATGAGGAAAACCATCTGACTTCGATTTCAGCAGGCTCTGGATCAACAAATCCCACAGGAAGATTTCAAAGCGTCTGCCAAGCTCAAACAACTCCCATTCAATTTTCTCCCATTTAACTCCACAATTTTTGTAGCAAATctgctttttttaacatttggaaTAAACAAATACCTACAACTTTTTAAGCATGCAGCTTTTACATTCCTGCAGCGTGTTGTACGTGTTAAAGCTAAACAGAGAGGGCTGGTTTCGGTGACATTTCCTCAATCTTTGTTCTGCGTTCATCCTACTCTTATCCTGTTTTCTCTCTGTTGTACCAGGAAGAGAACAAAAATTCATGTGTTTTGTCCCTGCGGCTGTGAGGTggtggagtgtttttttttttttttttttttttttgctgtggatgGTTTATTTTTAGCTGCTTTTCTTATCTGTCAACATGTGCACATCGATCGCTCCGCACCACCTTCACATGAATGAGCCTTTGACGTAAAAGAGCAAACTATCTGCCTCTCACTGGGAAGAAAGGCACAGAGGGAACCAGATCTGTTTCCCCCTTTTGCTTGGAATTCCTGCTCTGATGCACTGCTAGTCTGAAGCAGGGCTAGGTGATGTGACAGAAATCTCATATCACTGTATAAGTCATCTAACAATATTAATCTATCATGTAACAATatagtacactgtaaacaaaaaaagctgggtttcacacaatcgatttgttttgcgacaacataa
>TCONS_00052649
ttgtcctgtggctgccgtcgcatcatccaagtggatgctgcacactggtggtggtgtggagaaaccACCCATCCCCCCAAATGCTGAGAGATGAAGCAGATAAGTGGTGTAGCAGAGGGAGAGAAATCTCACACACCGTTCCAAAGGTAAGTTTCAGATCTTCAGTATTACACCAACAAAGCTTTAGTCACTTCccttaagcaggtgtgtttgcatCCACAGGAGAAGAAAGACATCCACGGAGGAGAAGAAAAGGAAGAGGGAGAGATGATGAGGAAAACCATCTGACTTCGATTTCAGCAGGTGATTGAATGAAGGAGATGAGTTTATATAGTGCATGAGGGATTGCAGGTGCAGGTGCGGGTGATCAGTAATCAGGTGATTGCTGTAGGAATGAGCCGAGGGTGTGACAATTTAATATACAATGAAACataatattactatattatgtaattataatatttaaaaataaaatatcaaccaCCCCTATCATGGAACTGTCCAGATGTctagtttataaatatatttattgtttttagttgtaaattcattttaaggaAACAAATCCTTGTAGTGCTTGCATTAAGATAAAACATAGAAAAGCAGATTTAGTGACATACAAACACAgctaaaaaaatataacaaataaaagtaGAAATAGTGCATTTCAGGACTCAGGGCCCCATGGCTGgcattgcttagggcccccaaatcactaaaccCACCTCTGATAGCAATACTAATAATGTTACATCATggacacgtgctgctgatgatgtgacaataaaagtgatttaataaaACTGATTTGATTTGACTGCtcatgaaagggatagttcacttaaaaatgacaattttattgtcatctgttgaacacaaaaaaagttattttagaaaaatgctgcttgctgggacccattgactcccatagtagcCTACATTTTattcctactatggaggtcaatgggtgCCAACAATagcatccttcaaaatatcttcttttgcagaagaaagaaacccacaAAGGTTTAAAATCACACAATGGAAAATAAACAGTGAggtaattttcacttttgggtgaactgtgcctttaatgtcATTACCAGGCTCTGGATCAACAAATCCCACAGGAAGATTTCAAAGCGTCTGCCAAGCTCAAACAACTCCCATTCAATTTTCTCCCATTTAACTCCACAATTTTTGTAGCAAATctgctttttttaacatttggaaTAAACAAATACCTACAACTTTTTAAGCATGCAGCTTTTACATTCCTGCAGCGTGTTGTACGTGTTAAAGCTAAACAGAGAGGGCTGGTTTCGGTGACATTTCCTCAATCTTTGTTCTGCGTTCATCCTACTCTTATCCTGTTTTCTCTCTGTTGTACCAGGAAGAGAACAAAAATTCATGTGTTTTGTCCCTGCGGCTGTGAGGTggtggagtgtttttttttttttttttttttttttgctgtggatgGTTTATTTTTAGCTGCTTTTCTTATCTGTCAACATGTGCACATCGATCGCTCCGCACCACCTTCACATGAATGAGCCTTTGACGTAAAAGAGCAAACTATCTGCCTCTCACTGGGAAGAAAGGCACAGAGGGAACCAGATCTGTTTCCCCCTTTTGCTTGGAATTCCTGCTCTGATGCACTGCTAGTCTGAAGCAGGGCTAGGTGATGTGACAGAAATCTCATATCACTGTATAAGTCATCTAACAATATTAATCTATCATGTAACAATatagtacactgtaaacaaaaaaagctgggtttcacacaatcgatttgttttgcgacaacataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052336 False 1058 lncRNA 0.43 2 22846336 22848196
TCONS_00052649 True 1814 lncRNA 0.39 1 22846383 22848196

Neighbor

gene id symbol gene type direction distance location
XLOC_025284 tanc2a coding upstream 28881 22578369 ~ 22817455 (+)
XLOC_025283 BX649557.1 coding upstream 277230 22568987 ~ 22569106 (+)
XLOC_025282 coa3b coding upstream 294980 22426714 ~ 22551356 (+)
XLOC_025281 arhgap27l coding upstream 424167 22375596 ~ 22422169 (+)
XLOC_025279 ifnphi3 coding upstream 465549 22334012 ~ 22380787 (+)
XLOC_025286 BX322574.1 coding downstream 6477 22854673 ~ 22880447 (+)
XLOC_025287 hdac5 coding downstream 57145 22905341 ~ 22976456 (+)
XLOC_025288 lsm12a coding downstream 135902 22984098 ~ 22994433 (+)
XLOC_025289 si:ch211-237i5.4 coding downstream 151653 22999849 ~ 23020551 (+)
XLOC_025290 nags coding downstream 181288 23029484 ~ 23060121 (+)
XLOC_025429 BX649540.1 misc downstream 7400543 30248739 ~ 30249036 (+)
XLOC_025276 NA non-coding upstream 683854 22157933 ~ 22162482 (+)
XLOC_025274 NA non-coding upstream 848778 21929928 ~ 21997558 (+)
XLOC_025272 NA non-coding upstream 1248428 21378996 ~ 21597908 (+)
XLOC_025271 NA non-coding upstream 1525851 21312584 ~ 21320485 (+)
XLOC_025293 NA non-coding downstream 248246 23096442 ~ 23213329 (+)
XLOC_025296 NA non-coding downstream 558275 23406471 ~ 23411521 (+)
XLOC_025298 NA non-coding downstream 669763 23517959 ~ 23524650 (+)
XLOC_025299 NA non-coding downstream 756282 23604478 ~ 23616801 (+)

Expression


Co-expression Network