G594732


Basic Information

Item Value
gene id G594732
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29294384 ~ 29294824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU677892
gtccctgggcaggttattaaaaactaTTACAATATAGACGATCATTGAGCAgggagcacacgcagagcaacataggacaagcaatcCATAGCATACaaacagagcaacatagaacaaaaatcagcaagacaaaattcttaaaagcaacaaagtgtttccacacctcacaagctacagacaacatggaaagcgtcaatacacagctagggattatgatcacaaatctgattgacctttagccatgtcttcatgttttttgtgaaggtgtgatatgtggtgcagttacagtggggagaacaagtatttgatacactgccgccgattttgcaggttttcatacttacaaagcatgtagaggtctgtaatttttatcataggaacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcacattgtatgcttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU677892 True 441 lncRNA 0.39 1 29294384 29294824

Neighbor

gene id symbol gene type direction distance location
LOC110527632 LOC106564416 coding downstream 11523 29278113 ~ 29282861 (-)
trnar-ccu-45 NA coding downstream 19072 29275240 ~ 29275312 (-)
trnar-ccu-44 NA coding downstream 21953 29272359 ~ 29272431 (-)
trnar-ccu-43 NA coding downstream 23464 29270848 ~ 29270920 (-)
trnar-ccu-42 NA coding downstream 27459 29266853 ~ 29266925 (-)
LOC118965281 LOC106591606 coding upstream 107733 29402557 ~ 29413825 (-)
LOC118965278 NA coding upstream 121683 29416507 ~ 29421654 (-)
LOC110527636 LOC106586052 coding upstream 159221 29454045 ~ 29495280 (-)
LOC110527615 LOC106610831 coding upstream 230903 29525727 ~ 29539694 (-)
LOC118965276 LOC106578600 coding upstream 433952 29728776 ~ 29733555 (-)
G594727 NA non-coding downstream 8706 29285444 ~ 29285678 (-)
trnar-ccu-29 NA non-coding downstream 38902 29237037 ~ 29255482 (-)
trnar-ccu-24 NA non-coding downstream 71741 29215055 ~ 29222643 (-)
G594707 NA non-coding downstream 133805 29160367 ~ 29160579 (-)
G594733 NA non-coding upstream 198 29295022 ~ 29295455 (-)
G594735 NA non-coding upstream 2018 29296842 ~ 29297324 (-)
G594737 NA non-coding upstream 3864 29298688 ~ 29298945 (-)
G594739 NA non-coding upstream 6882 29301706 ~ 29308548 (-)
G594776 NA non-coding upstream 38347 29333171 ~ 29334389 (-)
G594636 LOC106593246 other downstream 268335 29024407 ~ 29026049 (-)
G592298 NA other downstream 1810604 27482957 ~ 27483780 (-)
G591808 NA other downstream 2127916 27166175 ~ 27166468 (-)
LOC110527590 LOC106575121 other downstream 2708877 26575613 ~ 26585525 (-)
G590443 NA other downstream 3136079 26157993 ~ 26158305 (-)
G594762 NA other upstream 122031 29416855 ~ 29495130 (-)
G594900 NA other upstream 273377 29568201 ~ 29593462 (-)
G594905 NA other upstream 295169 29589993 ~ 29625899 (-)
G594906 NA other upstream 304807 29599631 ~ 29612736 (-)
G594968 LOC106591690 other upstream 426852 29721676 ~ 29727490 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G176138 NA unknown NC_035916.1 CM008319.1 14069749 ~ 14072684 (-)