G593513 (LOC106610831)


Basic Information

Item Value
gene id G593513
gene name LOC106610831
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29528027 ~ 29528910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU676563
tttttctcctgtgtgtattctctggtgtaaaGTCAGATGGCCAGAtctagtaaaactcttcccacattgatcacagctatacgatttttctcctgtgtgtattctctggtgtaaaGTCAGATGGTCAGAtctagtaaaactcttcccacattgatcacagctatacggtttctctcctgtgtgtattctctggtgtaaaGTCAGCTGGCCAGATGaaataaaactcttcccacattgatcacagctataaggtttctctcctgtgtgcattCTCTGGTGTAAAGTCAGCTGgccagatgtagtaaaactcttcccacattgatcacagctataaggtttctctcctgtgtgtgttctctggtgtaccaTCAGGCTGTCTGGccgagtaaaactcttcccacattgatcacagctatgaggtttctctcctgtgtgtgttctctggtgtatagtcagATGGCTAGATGCAGTAAAACTCTtaccacattgatcacagccaaAACGTTTCTCTTCAGTGTGAATTCGTTGATGTATTTTAAGTTTTAATGAAGAGTTGAAtcttttcccacagtcagagcagcagttagatttcttccctgtgggtctctgctggtgtttcttgaggagttctgatgtggagagactcttctctgcctcgtcatcaTCATGATTTTGTTGAGgatccccagaggatccacgattgtcccgtctctctc
>TU676564
tttttctcctgtgtgtattctctggtgtaaaGTCAGATGGCCAGAtctagtaaaactcttcccacattgatcacagctatacgatttttctcctgtgtgtattctctggtgtaaaGTCAGATGGTCAGAtctagtaaaactcttcccacattgatcacagctatacggtttctcacctgtgtgtgttctctggtgaagAGTCAGCTGgccagatgtagtaaaactcttcccacattgatcacagctataaggtttctctcctgtgtgtgttctctggtgtaccaTCAGGCTGTCTGGccgagtaaaactcttcccacattgatcacagctatgaggtttctctcctgtgtgtgttctctggtgtatagtcagATGGCTAGATGCAGTAAAACTCTtaccacattgatcacagccaaAACGTTTCTCTTCAGTGTGAATTCGTTGATGTATTTTAAGTTTTAATGAAGAGTTGAAtcttttcccacagtcagagcagcagttagatttcttccctgtgggtctctgctggtgtttcttgaggagttctgatgtggagagactcttctctgcctcgtcatcaTCATGATTTTGTTGAGgatccccagaggatccacgattgtcccgtctctctc

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU676563 False 716 lncRNA 0.43 3 29528027 29528910
TU676564 True 632 TUCP 0.44 3 29528027 29528910

Neighbor

gene id symbol gene type direction distance location
LOC110527619 LOC106578599 coding upstream 24240 29329584 ~ 29503787 (+)
LOC118965282 NA coding upstream 85357 29413870 ~ 29442670 (+)
LOC118965283 NA coding upstream 131843 29389617 ~ 29396184 (+)
LOC110527621 NA coding upstream 428616 29087111 ~ 29099411 (+)
LOC110527620 NA coding upstream 493421 29026331 ~ 29035347 (+)
LOC110527623 NA coding downstream 34899 29563350 ~ 29636769 (+)
LOC110527616 NA coding downstream 157506 29686416 ~ 29703056 (+)
LOC118965277 NA coding downstream 265787 29794697 ~ 29804454 (+)
trnak-uuu-3 NA coding downstream 361969 29890879 ~ 29890951 (+)
LOC110528937 NA coding downstream 402915 29931825 ~ 29944679 (+)
G593444 NA non-coding upstream 64363 29420905 ~ 29463664 (+)
G593441 NA non-coding upstream 109534 29416857 ~ 29418493 (+)
G593370 NA non-coding upstream 219074 29301795 ~ 29308953 (+)
G593367 NA non-coding upstream 229355 29297976 ~ 29298672 (+)
G593366 NA non-coding upstream 230600 29297128 ~ 29297427 (+)
G593597 NA non-coding downstream 185803 29714713 ~ 29715027 (+)
G593628 NA non-coding downstream 252217 29781127 ~ 29822082 (+)
G593662 NA non-coding downstream 309530 29838440 ~ 29839079 (+)
G593695 NA non-coding downstream 379927 29908837 ~ 29909102 (+)
G593283 NA other upstream 463435 29059698 ~ 29064592 (+)
G593171 NA other upstream 635602 28892163 ~ 28892425 (+)
G593144 NA other upstream 686944 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1653606 27854006 ~ 27874521 (+)
G593774 LOC106593940 other downstream 503049 30031959 ~ 30032621 (+)
G596168 NA other downstream 1374269 30903179 ~ 30903887 (+)
G596297 NA other downstream 1552811 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 2480404 32007023 ~ 32013203 (+)
G599004 NA other downstream 3706903 33235813 ~ 33236636 (+)

Expression


Co-expression Network