XLOC_025287 (hdac5)


Basic Information

Item Value
gene id XLOC_025287
gene name hdac5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22905341 ~ 22976456 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049921
ATGCTTTTAAAGCCAACCGTACCGGGACTGTGCGCAATGTTGCAGACGATCTATGAGACAGAATCCTgcttttcttcagacagcacatCCAGCAGAGAGCGACCCGTGGAGCTGCTTCCTCAGTCCAGAAGCACCAGCATGCCTAGCACCGTGGATGTGAAGACCTTACTACCCTCCGGGATGCAGAGCCCGGTGGGAGGTGGAGGAGATCAGGGCGGAGGTAGCGGTGGTCCGGTAGACCTGCGTACAGACCCACGTCTGAGTGCGCTAAGTGCTGTAGACCCATCTCTGAGAGAAAAACAGCTTCAGCACGAGCTGCTCTTACTCAAACAGCAACAGGAGCTCCAGAAACAGCTGCTGTTCGCCGAGTTCCAGAAGCAGCACGAGGTTTTGACGCGCCAACATGAAGTGCAGCTACAGGAACATCTGAAGCAACAGCAGGAGATCCTCGCCGCGAAACGTCAGCAGGAGCTCGAGCAGAAGAGGAAGCTTGAACAGCAGCGTCACGAAGAGATGGAGAAACAGAGACTGGAACAACAGCTCATCATGCTGCGAAACAAAGAGAAAGGCAAAGAGAGTGCCATCGCCAGTACTGAGGTCAAACTGAAGCTGCAGGAGTTTCTGTTGAGCAAAAAGGAGCCCGGCCCCGGTGGACTCAACCATTCCTTCCCCCAGAAGTGCTGGGGGGCTCACCACACATCCCTGGAGCAGAGCTCTCCTCCACAGAGCAACACACCAGGAACACCACCCTCCTACAAACTCCCCCCGCTCTTAGGATCCTACGAAGGCAAGGATGACTTCCCTCTGCGGAAAACCGCCTCTGAGCCCAATCTGAAGGTACGTTCACGGTTAAAACAGAAGGTGGCTGAGAGGAGGAGCAGCCCACTGCTCAGGCGGAAAGATGGTACTGTGATCAGCACTTTCAAGAAAAGGGCAATCGAGATCTCAGtgtccTCTATGTGCAGCAGTGCTCCTGGCTCTGGTCCCAGCTCTCCTAACAGCTCAAACTGTGCCATTGCTGAGAATGGATCCAGCGGATCCGTCCCAAACATCCACGCTGAGCAGTTACGTTCTCTGCATCAGTCTTTGACTGGCGATGGGGCACCGAGTCCCCTAAGCCTCTACACTTCTCCATCTTTGCCCAACATCTCCCTGGGACTGCCTGCCAACGCCCACATCACGGCCCCTCAGAAACTCAGTGCCCAGCAGGAGGCAGAGCGGCAGACAATCCAGAGTTTGCGTCAAGGTGGGGCACTAACAGGGAAGTTCATCAGCACATCGTCCCTGCCAACGTGCCTTTCCACCGGGGCACCCCATGACCCTGAACCCCCCGCCGCCTCTAATAGCCACAGTAGCCATTCCTCGTTGCTCCAGCACGTCTTGCTGTTGGAGCAAGCTCGTCAACAGAGCGCACTTCTCGCAGttcccATGTATGGACAGTCTCCGCTGGTAACGGGTGAGCGGGTATCCAACAACATGCGTACAGTGAACAAGCTGCCCAGGCATCGACCACTGAGCCGTACACAGTCAGCACCCCTGCCCCAAACACCGCAGGCCCTGCAGCACCTCGTAATGCAACAGCAGCACCAGCACTTCCTTGAGAAACAGAAACACTACCAGCTGAACAAGATTCTTTCTAAAGGGACGGATCTTCCAAGACAGCCTCCCACTCACCCAGAGGAGACGGAGGAGGAACTTACGGAAACCGCAGAGATGCAGGACGAGCGAGGGGAGGGGCCTGATCATGTAAGGGAGGGGTTACAGAAAGACAGCTCTGGTGAAACCACACCTCCCTCTGAACGCATAGTTCCGCTGAAGGGAGAAAGCACGGAAAGTGACTTggaagaagaagatgatgaagatgaagcgGTCGAACTGAGGGAGTGTGATGAAGACGCCCCTTATGGCCAGTATTTGGACCAGCAGCATGTGCAGCAGCTCAACGTGTTCCAGGCCTCTCTGTCCATCACAGGAATGCCCCACAGACCCCTGGGAAGGGCTCAGTCGTCCCCTGTCACCTCCAGTCTTAAAGGAACAACCCTGAACGAGGTGCCCATTAAGCATCTCTTTACGACAGGGCTGGTTTACGACACCTTCATGCTGAAGCACCAGTGCATGTGTGGAAATACCAACATTCATCCCGAACACGCGGGTCGCATTCAGAGCGTTTGGTCCAGGCTGCAGGAAACAGGACTGCTGGGCCGCTGTGAGAGGATCAGAGGAAGGAAGGCCACATTAGACGAGATCCAGACCGTCCATTCAGAGTATCACACGCTGCTCTACGGCACCAGTCCACTCAACCGACAGAAGCTGGACAGCAAGAAACTTTTAGgtccAATAAGCCAGAAAATGTATGCTGTCCTGCCGTGTGGAGGCATCGGGGTGGACAGTGACACAGTGTGGAACGAGATGCATTCGTCAGGAGCCGTACGGATGGCAGTCGGCTGCGTCATTGAACTGGCATTTAAAGTTGCAGCTGGGGAGCTGAAGAATGGTTTTGCAGTGGTCCGTCCTCCTGGTCATCATGCTGAGGAATCCACCGCCATGGGTTTCTGCTTCTTCAACTCAGTCGCCATCACTGCCAAACTCCTGCAGCAGAAACTCGGTGTGGGCAAGATCCTCATCATAGACTGGGATATCCATCATGGAAACGGGACCCAGCAGGCTTTCTATAATGACCCCAATGTGTTATATATTTCTCTGCATCGTTATGACGATGGCAACTTCTTCCCTGGCAGTGGCGCTCCTGAGGAGGTGGGTGTGGGTCCAGGAGAGGGCTTTAATGTCAACATTGCCTGGACAGGTGGAGTGGAGCCACCTATGGGTGATGTGGAGTATCTAACCGCCTTCAGAACGGTGGTGATGCCCATTGCCAATGAGTTTTCGCCGGATGTGGTGCTGGTGTCAGCTGGTTTCGATGCTGTGGAGGGCCACCAGTCACCGCTGGGCGGATACAACGTCACTGCCAAATGCTTTGGTCATCTCACTAAGCAATTGATGAAGTTGGCTGGTGGTCGTGTGGTTTTGGCACTGGAAGGAGGTCACGACCTCACCGCCATCTGTGACGCATCTGAATCCTGCGTGGAGGCACTTTTGGGAGATGAGTTGAATCCTCTACCATTGACGGTGCTTCAGCAGAAACCATGTCCAAAAGCTACAGCTTCTCTAGAAAGAGTCATTGAGATTCAGAGTAAACACTGGACGTCTCTGCAGAGGTTGGCTCCCACGGTAGGTCAGTCTCTACTGGATGCTCAGAGGCGAGAGAAGGATGAGGCAGACACTTTGACCGCCATGGCCTCTCTCACTGTGGACAATGAACAGCAAACCACCTCCACTGAAACCAGCAGATCAGCAGAGGAGCCGATGGAGGAGGAGCCCGTGTTGTAG
>TCONS_00049922
TGGATGTGAAGACCTTACTACCCTCCGGGATGCAGAGCCCGGTGGGAGGTGGAGGAGATCAGGGCGGAGGTAGCGGTGGTCCGGTAGACCTGCGTACAGACCCACGTCTGAGTGCGCTAAGTGCTGTAGACCCATCTCTGAGAGAAAAACAGCTTCAGCACGAGCTGCTCTTACTCAAACAGCAACAGGAGCTCCAGAAACAGCTGCTGTTCGCCGAGTTCCAGAAGCAGCACGAGGTTTTGACGCGCCAACATGAAGTGCAGCTACAGGAACATCTGAAGCAGGAGATCCTCGCCGCGAAACGTCAGCAGGAGCTCGAGCAGAAGAGGAAGCTTGAACAGCAGCGTCACGAAGAGATGGAGAAACAGAGACTGGAACAACAGCTCATCATGCTGCGAAACAAAGAGAAAGGCAAAGAGAGTGCCATCGCCAGTACTGAGGTCAAACTGAAGCTGCAGGAGTTTCTGTTGAGCAAAAAGGAGCCCGGCCCCGGTGGACTCAACCATTCCTTCCCCCAGAAGTGCTGGGGGGCTCACCACACATCCCTGGAGCAGAGCTCTCCTCCACAGAGCAACACACCAGGAACACCACCCTCCTACAAACTCCCCCCGCTCTTAGGATCCTACGAAGGCAAGGATGACTTCCCTCTGCGGAAAACCGCCTCTGAGCCCAATCTGAAGGTACGTTCACGGTTAAAACAGAAGGTGGCTGAGAGGAGGAGCAGCCCACTGCTCAGGCGGAAAGATGGTACTGTGATCAGCACTTTCAAGAAAAGGGCAATCGAGATCTCAGtgtccTCTATGTGCAGCAGTGCTCCTGGCTCTGGTCCCAGCTCTCCTAACAGCTCAAACTGTGCCATTGCTGAGAATGGATCCAGCGGATCCGTCCCAAACATCCACGCTGAGCAGTTACGTTCTCTGCATCAGTCTTTGACTGGCGATGGGGCACCGAGTCCCCTAAGCCTCTACACTTCTCCATCTTTGCCCAACATCTCCCTGGGACTGCCTGCCAACGCCCACATCACGGCCCCTCAGAAACTCAGTGCCCAGCAGGAGGCAGAGCGGCAGACAATCCAGAGTTTGCGTCAAGGTGGGGCACTAACAGGGAAGTTCATCAGCACATCGTCCCTGCCAACGTGCCTTTCCACCGGGGCACCCCATGACCCTGAACCCCCCGCCGCCTCTAATAGCCACAGTAGCCATTCCTCGTTGCTCCAGCACGTCTTGCTGTTGGAGCAAGCTCGTCAACAGAGCGCACTTCTCGCAGttcccATGTATGGACAGTCTCCGCTGGTAACGGGTGAGCGGGTATCCAACAACATGCGTACAGTGAACAAGCTGCCCAGGCATCGACCACTGAGCCGTACACAGTCAGCACCCCTGCCCCAAACACCGCAGGCCCTGCAGCACCTCGTAATGCAACAGCAGCACCAGCACTTCCTTGAGAAACAGAAACACTACCAGCTGAACAAGATTCTTTCTAAAGGGACGGATCTTCCAAGACAGCCTCCCACTCACCCAGAGGAGACGGAGGAGGAACTTACGGAAACCGCAGAGATGCAGGACGAGCGAGGGGAGGGGCCTGATCATGTAAGGGAGGGGTTACAGAAAGACAGCTCTGGTGAAACCACACCTCCCTCTGAACGCATAGTTCCGCTGAAGGGAGAAAGCACGGAAAGTGACTTggaagaagaagatgatgaagatgaagcgGTCGAACTGAGGGAGTGTGATGAAGACGCCCCTTATGGCCAGTATTTGGACCAGCAGCATGTGCAGCAGCTCAACGTGTTCCAGGCCTCTCTGTCCATCACAGGAATGCCCCACAGACCCCTGGGAAGGGCTCAGTCGTCCCCTGTCACCTCCAGTCTTAAAGGAACAACCCTGAACGAGGTGCCCATTAAGCATCTCTTTACGACAGGGCTGGTTTACGACACCTTCATGCTGAAGCACCAGTGCATGTGTGGAAATACCAACATTCATCCCGAACACGCGGGTCGCATTCAGAGCGTTTGGTCCAGGCTGCAGGAAACAGGACTGCTGGGCCGCTGTGAGAGGATCAGAGGAAGGAAGGCCACATTAGACGAGATCCAGACCGTCCATTCAGAGTATCACACGCTGCTCTACGGCACCAGTCCACTCAACCGACAGAAGCTGGACAGCAAGAAACTTTTAGgtccAATAAGCCAGAAAATGTATGCTGTCCTGCCGTGTGGAGGCATCGGGGTGGACAGTGACACAGTGTGGAACGAGATGCATTCGTCAGGAGCCGTACGGATGGCAGTCGGCTGCGTCATTGAACTGGCATTTAAAGTTGCAGCTGGGGAGCTGAAGAATGGTTTTGCAGTGGTCCGTCCTCCTGGTCATCATGCTGAGGAATCCACCGCCATGGGTTTCTGCTTCTTCAACTCAGTCGCCATCACTGCCAAACTCCTGCAGCAGAAACTCGGTGTGGGCAAGATCCTCATCATAGACTGGGATATCCATCATGGAAACGGGACCCAGCAGGCTTTCTATAATGACCCCAATGTGTTATATATTTCTCTGCATCGTTATGACGATGGCAACTTCTTCCCTGGCAGTGGCGCTCCTGAGGAGGTGGGTGTGGGTCCAGGAGAGGGCTTTAATGTCAACATTGCCTGGACAGGTGGAGTGGAGCCACCTATGGGTGATGTGGAGTATCTAACCGCCTTCAGAACGGTGGTGATGCCCATTGCCAATGAGTTTTCGCCGGATGTGGTGCTGGTGTCAGCTGGTTTCGATGCTGTGGAGGGCCACCAGTCACCGCTGGGCGGATACAACGTCACTGCCAAATGCTTTGGTCATCTCACTAAGCAATTGATGAAGTTGGCTGGTGGTCGTGTGGTTTTGGCACTGGAAGGAGGTCACGACCTCACCGCCATCTGTGACGCATCTGAATCCTGCGTGGAGGCACTTTTGGGAGATGAGTTGAATCCTCTACCATTGACGGTGCTTCAGCAGAAACCATGTCCAAAAGCTACAGCTTCTCTAGAAAGAGTCATTGAGATTCAGAGTAAACACTGGACGTCTCTGCAGAGGTTGGCTCCCACGGTAGGTCAGTCTCTACTGGATGCTCAGAGGCGAGAGAAGGATGAGGCAGACACTTTGACCGCCATGGCCTCTCTCACTGTGGACAATGAACAGCAAACCACCTCCACTGAAACCAGCAGATCAGCAGAGGAGCCGATGGAGGAGGAGCCCGTGTTGTAGAAGAGCGAGTTCAGGTCATCACTGCTCCAGTCTTCTCGTCCACATGTGCTTGGCACTGGTCACCCTGACGTCACGCCTCATGTTCCTCCTCCCAGCTCTTTGATTGGTTCCCTCGGTCCGTCACTCATTTCCAGGTGCTTGACTGACACGTTCACAGCACACCCACTTTTTGCTTTTCCGAGGTTAAAGCATAGCAAACCGTTGCCCAAAGTGGACAACAAAGGCATGATGGGTAATTACAGGACCACTCCAGTGAGGGTTGCGCAGCTGGACAGGCCGAACAATGGAAGTACTCTTCAGAAAGAGAGgcctttgatttcattttcatgtTGTGTTGGACTGAGGATGTaaag

Function

symbol description
hdac5 Predicted to enable NAD-dependent histone deacetylase activity (H3-K14 specific) and metal ion binding activity. Acts upstream of or within pronephros morphogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC5 (histone deacetylase 5).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0016575 histone deacetylation biological_process
GO:0040029 regulation of gene expression, epigenetic biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004407 histone deacetylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121219-3 Predicted to enable NAD-dependent histone deacetylase activity (H3-K14 specific) and metal ion binding activity. Acts upstream of or within pronephros morphogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC5 (histone deacetylase 5).

Ensembl:

ensembl_id ENSDARG00000075139

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049921 False 3387 mRNA 0.55 25 22905341 22976103
TCONS_00049922 True 3583 mRNA 0.54 24 22935183 22976456

Neighbor

gene id symbol gene type direction distance location
XLOC_025286 BX322574.1 coding upstream 24894 22854673 ~ 22880447 (+)
XLOC_025285 NA coding upstream 57145 22846336 ~ 22848196 (+)
XLOC_025284 tanc2a coding upstream 87886 22578369 ~ 22817455 (+)
XLOC_025283 BX649557.1 coding upstream 336235 22568987 ~ 22569106 (+)
XLOC_025282 coa3b coding upstream 353985 22426714 ~ 22551356 (+)
XLOC_025288 lsm12a coding downstream 7642 22984098 ~ 22994433 (+)
XLOC_025289 si:ch211-237i5.4 coding downstream 23393 22999849 ~ 23020551 (+)
XLOC_025290 nags coding downstream 53028 23029484 ~ 23060121 (+)
XLOC_025291 b4galnt2.1 coding downstream 87262 23063718 ~ 23085279 (+)
XLOC_025292 gngt2a coding downstream 116306 23092762 ~ 23096141 (+)
XLOC_025429 BX649540.1 misc downstream 7272283 30248739 ~ 30249036 (+)
XLOC_025276 NA non-coding upstream 742859 22157933 ~ 22162482 (+)
XLOC_025274 NA non-coding upstream 907783 21929928 ~ 21997558 (+)
XLOC_025293 NA non-coding downstream 119986 23096442 ~ 23213329 (+)
XLOC_025296 NA non-coding downstream 430015 23406471 ~ 23411521 (+)
XLOC_025298 NA non-coding downstream 541503 23517959 ~ 23524650 (+)
XLOC_025299 NA non-coding downstream 628022 23604478 ~ 23616801 (+)
XLOC_025301 NA non-coding downstream 688705 23665161 ~ 23668197 (+)

Expression


Co-expression Network