XLOC_025288 (lsm12a)


Basic Information

Item Value
gene id XLOC_025288
gene name lsm12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22984098 ~ 22994433 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049923
TACGTGCAGCGACTGCTCCGTTTCCTGGCGGAGAAGATGGCGGCTCCTGGACCAGGAGAGTATTTCAGCGTCGGGAGCCACGTCTCCTGCCTCACCTGCCTGGGGCAGCGCTTGCAAGGAGAGGTCGTCGCTTTCGACTACCCGTCCAAGATGCTGACGTTGAAATGTGCCCCGTCCAGCGGTAAACCCAACCTTAGCGATGTGATGCTTGTTAACTTGGCCTATGTGTCCGAGGTGGACATCATCACTGACCGTGCTGAAACTCCTCCCCCTTTAGCATCTCTCAATTTTAACAAGCTTGTGAACAGAGCACGAGCTGAAAAGGAAGATAAGTTGTCGCTAGCTTATGCAGTTAGTGCTGGGGTCTCTGTAGAGGGTCAGCAGCTGTTCCAGACCATTCATAAAACCATCAAAGAGTGCAAATGGCAGGAGAAGAACATCATCGTGATGGACGATGTGGTCATCAGTCCGCCATACCAAGTGGACAACTGTAAAGGCAAAGAGGGCAGCGCTTTAAGCCATGTGCGCAAAATAGTCGAGAAACATTTTCGAGATGTGGAGAGTCAGATATCAGTGCAGCATTCACAGCAAGCTCAACACACACAGGACTCTGCTTTATCATCATGAGCCCAGACTCAGAGAGGGAACATTATGCTGACAAAGGAAGTGTTGTtcgttttaaattaatattttctgatgttttttttttttttttttaaccaatcgCCAGACAAAGGTTGAGATAGCTGATACTCAGCGTTTTGAGCAAGGATGACGATCTTAAACGTCTGAAGAGAAAAACTGCTTCCACCCACAAAAAAAGAGAGCAAAAACAGTGCCGTCATAGAATATCATTTGATAGAGAAAACATCTGATGTCCTcatttcttttcttgtttttctgtTCTGTTGGATCGCTGTTCTTTGCGTTTACTTCTGTGATTCATTTTGATTCACTTTTCACTAAAAAAATCTTGTAATCCGTGATCTTTCTTTCTACCCATAAAGAAATGTGGCACAATGTGTGTGAGGATTGAAGCAAAAACTGTTTTATTACGTTAAAAATTTGCTCAgactgaattattattaattttctttgcGCAAATAGTTTCTCTTATACATAGGTTTGGATAGACTAATAGGGCTTAAGGGGCAGGATGGGAAATTGAATTGCACTTAACATCTACCCAACATCtcaatttctgaaaaaaatattttttttacatttcttacattgtaaatgtcactttaagtgacGGACAAAGGAGTAACACTCTTGAGTTCTGCAAACATCCTTTCAGTTTACATGTAGAACGTGTTCATGACGTCTCTTCAGCTCCAGGAAGGAAATGGAGAGTCCCTTTGgttaaacattacattattttctTCCATTTTGGTCCTGTAGTTGCCATTTTGAATACCTCTTCCATATTGGGACCATTTTTTTCATGATGCAATGTttgtattatctttattattattattattatttccgaAAGCATCCAAACTGGAAGGGTAAATGCGATCCATGCATTCCTTGATTATTTCAgatttactttgtttttctttagATATGCGTCAGCGTAAGACTGCTCGTATCTTGCTCATCTCTCGCAGCAGGACTGATCTCTTTTCTGAGCGGGACTATTTGTAATCGCCTTTTTTGGGGGGGAAGTAAACATTAAAGTGATCTCTTGCCATGTTGAGAGACTGGGACAGGGGGGACGGGTGGAAATCCTCCCCGTCCCAGCCTCGTGAACTTTGTAGCCTGATGGAGGCTCTAGCAGTGGCGCCAAGCTGTGACGGGCATATCCGCGTTACACAGCAGTTCGTATGGCTGTGTGCTAACGGGGTTGCTGTTGGCCTATAGGTTTCTTtcgcagtattttattttttattttcaaatagtaatgaacaaataaataaaaaaagagaaaaa

Function

symbol description
lsm12a Orthologous to human LSM12 (LSM12 homolog).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040516-12 Orthologous to human LSM12 (LSM12 homolog).

Ensembl:

ensembl_id ENSDARG00000028848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049923 True 1938 mRNA 0.42 5 22984098 22994433

Neighbor

gene id symbol gene type direction distance location
XLOC_025287 hdac5 coding upstream 7642 22905341 ~ 22976456 (+)
XLOC_025286 BX322574.1 coding upstream 103651 22854673 ~ 22880447 (+)
XLOC_025285 NA coding upstream 135902 22846336 ~ 22848196 (+)
XLOC_025284 tanc2a coding upstream 166643 22578369 ~ 22817455 (+)
XLOC_025283 BX649557.1 coding upstream 414992 22568987 ~ 22569106 (+)
XLOC_025289 si:ch211-237i5.4 coding downstream 5416 22999849 ~ 23020551 (+)
XLOC_025290 nags coding downstream 35051 23029484 ~ 23060121 (+)
XLOC_025291 b4galnt2.1 coding downstream 69285 23063718 ~ 23085279 (+)
XLOC_025292 gngt2a coding downstream 98329 23092762 ~ 23096141 (+)
XLOC_025293 NA coding downstream 102009 23096442 ~ 23213329 (+)
XLOC_025429 BX649540.1 misc downstream 7254306 30248739 ~ 30249036 (+)
XLOC_025276 NA non-coding upstream 821616 22157933 ~ 22162482 (+)
XLOC_025274 NA non-coding upstream 986540 21929928 ~ 21997558 (+)
XLOC_025296 NA non-coding downstream 412038 23406471 ~ 23411521 (+)
XLOC_025298 NA non-coding downstream 523526 23517959 ~ 23524650 (+)
XLOC_025299 NA non-coding downstream 610045 23604478 ~ 23616801 (+)
XLOC_025301 NA non-coding downstream 670728 23665161 ~ 23668197 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_02171666_02177554 LSM12A, LSM12 coding CI01000034 null 2171604 ~ 2178398 (-)