XLOC_025289 (si:ch211-237i5.4)


Basic Information

Item Value
gene id XLOC_025289
gene name si:ch211-237i5.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22999849 ~ 23020551 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049924
TGTCTTTGAGGAAAAAGTGGTTCTGTTAGTGTCTAGTGGATAAAAGGAACAAAGCACTCAGTGTTTCACGCACTATATCTATTACTACACTTTTAATGTTTATTGGTAAAAACCGCAAGCTTTTGTGTGTTTTCGCATTGACTGCGAGCATTTCGGGGGCGGAGGGGCTGGGGGAAGAAAATGAGTCGCATATGGTTTTAAGGCGATTAAAAAAGACATTTCAGCTGCACCAGATTGCGAATATCCAGCTCATCTGATAAAGTCAGCATTTTCGTACCACAACATAAACATTTAATGGAAACTAACTGCAGTGTCCCGTAGAAAGCTGAGGATCCGCTGTGCAGCAGTCTGTCGCCACATCATGCTGCTCTCCATCGCGGTGTTTTCACTCTTCCTGTGTCCGTCGAGGAGCTCTAGGCTGTGCTCTCACCTGTGCCAGTGCTATGAACACTCAGACTTGGTGGACTGCCATGCCAGGGGCTTCGAGGACGTGCCTCACGGTCTTCCTCACGGGACCTGGCTCCTGGATTTGGGAGGAAACAGACTCACGGAGATCCGCAGTCGAGCTTTTGCTGGTCTGTGGTCTTTGCGTATTCTAGTGCTTTCTGACAGCAACATCCAGGCTCTTCAATCCCAGGCTTTCTTCTCTCTATCCTTTCTGGAGAAGCTGGACATGAGTCATAACAACCTCACCCAGATCCCACCGAACTTCTCCGAGAGCCTATCTTCCTTGCGTGAGCTGCGGCTGGACCACAATGCACTGCAGCTGTTGAAACCTCCAGGGCTGGAACATCTGGAGAACCTTGCGAAGCTGGACCTCAGCCACAATCACATCCAGTCTCTGGAACCCGGCGCTTTCCGAGGCCTGTCCCGTCTGCGGCACCTTTACCTGCAAGGGAACCACCTAGATGTCATTCGGGACAGATCCCTCACTATGTTGCCTGCTCTAGAAGTCCTGCAGCTAGGGAACAACAACATCTCTCAGATTGAGGTAAACGCACTCGCACCCTTACACAGTCTCTCGCTTTTGGGTTTAGAAGGGAATCAACTGGAGCACCTGAATTTTAAGACGTTTTTGAGTTTGCGCACGGCCACTACGCACCTGCTGTTGTCTGGAAACCCGTGGAGCTGCGACTGTGACCTGCACCGTGTTTTCAGCAAGCTGCTTAGCGTTCGGCACCTTCACGTTGACGACTACCATAACGTAACTTGTCGGGAGCCGTGGCAGCTGGCCGGAGCCTCTTTGGCCTGGGTGGACAGTCAGCTGTGCGTGGCCGAGACAGTCACTGTGCTGGTCATCACCGCTACCGTCATCGTGACCGTCTTTGGTGCTTTGATCATGGCAGAGAGAAAACGCAAGAAGAGAAAGTACTGGGAGCAGAACGATGGGGAATCACAATAGTCTGATAATGCATACACTAAAACATAAacctcaaactggattcctggagagccacagctctgcagagttttgctctaaccctaatcaaac

Function

symbol description
si:ch211-237i5.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-468 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000088833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049924 True 1492 mRNA 0.51 2 22999849 23020551

Neighbor

gene id symbol gene type direction distance location
XLOC_025288 lsm12a coding upstream 5416 22984098 ~ 22994433 (+)
XLOC_025287 hdac5 coding upstream 23393 22905341 ~ 22976456 (+)
XLOC_025286 BX322574.1 coding upstream 119402 22854673 ~ 22880447 (+)
XLOC_025285 NA coding upstream 151653 22846336 ~ 22848196 (+)
XLOC_025284 tanc2a coding upstream 182394 22578369 ~ 22817455 (+)
XLOC_025290 nags coding downstream 8933 23029484 ~ 23060121 (+)
XLOC_025291 b4galnt2.1 coding downstream 43167 23063718 ~ 23085279 (+)
XLOC_025292 gngt2a coding downstream 72211 23092762 ~ 23096141 (+)
XLOC_025293 NA coding downstream 75891 23096442 ~ 23213329 (+)
XLOC_025294 col1a1a coding downstream 200496 23221047 ~ 23239458 (+)
XLOC_025429 BX649540.1 misc downstream 7228188 30248739 ~ 30249036 (+)
XLOC_025283 BX649557.1 non-coding upstream 430743 22568987 ~ 22569106 (+)
XLOC_025276 NA non-coding upstream 837367 22157933 ~ 22162482 (+)
XLOC_025274 NA non-coding upstream 1002291 21929928 ~ 21997558 (+)
XLOC_025296 NA non-coding downstream 385920 23406471 ~ 23411521 (+)
XLOC_025298 NA non-coding downstream 497408 23517959 ~ 23524650 (+)
XLOC_025299 NA non-coding downstream 583927 23604478 ~ 23616801 (+)
XLOC_025301 NA non-coding downstream 644610 23665161 ~ 23668197 (+)

Expression


Co-expression Network