XLOC_025291 (b4galnt2.1)


Basic Information

Item Value
gene id XLOC_025291
gene name b4galnt2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23063718 ~ 23085279 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049932
attttatttacaatgcaTTAGTGTGCTTGGTTAATAATATACAGAAATTTGATGCCATCAAGATTCTAGCTAAGAGGAGTGGTGTAAAGCAGACTGCTCTACCACTGAACAAGGAAGAGGTTTTAGATGTACCCATAAGAGGAAGGAGCATGAGAATGTTTCTCACGGATGACAAGATCTTATTTGCTCGACAGATTTTCCTGATATGAGCATTTTACACCGATTATCTCATATGATGAAAGTTAAAAACCGCTTGAAGGTGGTTTTAGTCCTGATGTTGCTCAGTTTACTGATTTTCCTGTTTATACAAAGTGAAGTGTTCGACAGGATGCCAACATTCCGGGTGAAAACAGATGCAGATATTCTCATCGCCCCGGCCAACTCTCCTCTACAATATCCTATAACAGGTTTTAGGGTAGTTCCTCTGAAGAAAAGTATGATACCAGGTCTTGCCCTTCGAGTAAAAAGGACAAGTGCACGAACAAATAGTGGGCAGTACAAGGTGTCTTTGAGTGTGATGAGTGGTGTGCTCTCAGTGGAGGATGTTCAGGATGGACAGCAGGTGGATGGACAGGGCCAGAGTGAACTTACCATCTCATCCAGCAACCTCACACAACTCAATGATCTGCTGTCCAGAGTGAGCTACACCAGCACCGTCTACCACATTAGAACATCAGACCTGGCCTGTTTGTCTTTTGAGGACCATGAAGCCAAATTTCCAATCATGATTAGGAGACCAACAGTTCCTGTTCTGTATGACCCAGGAGAagATATCAACTCACAGGTGACCATATTAACCAAGACGTTTTTGAGATACAAGGAGCTGAATGTCCTCATCGAGAGCATCCGGAAGTTTTACCCCAAAATCAAGATCATCATTGCAGACGACAGTCTAAACCCTGAACGTGTGTCCGGAGACAACATAGAGCACTTCATCATGCCTCCTGCACAGGGGTGGTTTGCGGGCCGAAATCTGGCTGTATCTCAATTGACAACAAAATACTTCCTGTGGGTCGATGATGACTTTGAGTTCTTGCATGAGACCCGGATCGAGAGTTTTGTGGAGATTATGGAAGCAGTTCCAGACCTAGATGTTATTGGCGGTGAGGTGTCTGGTGACCAGTTTTATTTCCTTCTGGAATATGAAGAGGGAGCTGAGCATGAAGGAGGAGGATGTCTAAGGCGTGTTAGAGGAGAGTTTCATCAGCCACTTTCAGGGTTTGATggatgccatcttgtggatggtgTAACAAATTATTTCTTGGCAAGAACTGAAGCCGTGCGAAGAGTTGGTTTCGACCCGTTCTTGAAAAGAGTTGGTCACACAGAGTTTTTCATCGATGGCCTTGGAAAGTTATTGGTAGCCACATGTAAGGGCTTCTGTATTGGTCATCAGACTCATCAGACATATGACAGCTATGAAAGTTACAGGAATCAAGAAAAAGAGGATGAAAAGAGAAAACTGGCTCATCACTTCTTTAAGAATTATCTCAACTGCATCAAGTACTGA
>TCONS_00049931
attttatttacaatgcaTTAGTGTGCTTGGTTAATAATATACAGAAATTTGATGCCATCAAGATTCTAGCTAAGAGGAGTGGTGTAAAGCAGACTGCTCTACCACTGAACAAGGAAGAGGTTTTAGATGTACCCATAAGAGGAAGGAGCATGAGAATGTTTCTCACGGATGACAAGATCTTATTTGCTCGACAGATTTTCCTGATATGAGCATTTTACACCGATTATCTCATATGATGAAAGTTAAAAACCGCTTGAAGGTGGTTTTAGTCCTGATGTTGCTCAGTTTACTGATTTTCCTGTTTATACAAAGTGAAGTGTTCGACAGGATGCCAACATTCCGTGCCAGTCCTGAACATGACATGGCCTCAAGGTTAAATATTACTTGTGAAGGAGCTGATCTCACCAGGCAGTTCGTGCCAAAAGATCAACTAAATGATCTACTTGAACGCAGAGAAAAGGAGTATAAGCAAAGTAAACTCAGGGTGAAAACAGATGCAGATATTCTCATCGCCCCGGCCAACTCTCCTCTACAATATCCTATAACAGGTTTTAGGGTAGTTCCTCTGAAGAAAAGTATGATACCAGGTCTTGCCCTTCGAGTAAAAAGGACAAGTGCACGAACAAATAGTGGGCAGTACAAGGTGTCTTTGAGTGTGATGAGTGGTGTGCTCTCAGTGGAGGATGTTCAGGATGGACAGCAGGTGGATGGACAGGGCCAGAGTGAACTTACCATCTCATCCAGCAACCTCACACAACTCAATGATCTGCTGTCCAGAGTGAGCTACACCAGCACCGTCTACCACATTAGAACATCAGACCTGGCCTGTTTGTCTTTTGAGGACCATGAAGCCAAATTTCCAATCATGATTAGGAGACCAACAGTTCCTGTTCTGTATGACCCAGGAGAagATATCAACTCACAGGTGACCATATTAACCAAGACGTTTTTGAGATACAAGGAGCTGAATGTCCTCATCGAGAGCATCCGGAAGTTTTACCCCAAAATCAAGATCATCATTGCAGACGACAGTCTAAACCCTGAACGTGTGTCCGGAGACAACATAGAGCACTTCATCATGCCTCCTGCACAGGGGTGGTTTGCGGGCCGAAATCTGGCTGTATCTCAATTGACAACAAAATACTTCCTGTGGGTCGATGATGACTTTGAGTTCTTGCATGAGACCCGGATCGAGAGTTTTGTGGAGATTATGGAAGCAGTTCCAGACCTAGATGTTATTGGCGGTGAGGTGTCTGGTGACCAGTTTTATTTCCTTCTGGAATATGAAGAGGGAGCTGAGCATGAAGGAGGAGGATGTCTAAGGCGTGTTAGAGGAGAGTTTCATCAGCCACTTTCAGGGTTTGATggatgccatcttgtggatggtgTAACAAATTATTTCTTGGCAAGAACTGAAGCCGTGCGAAGAGTTGGTTTCGACCCGTTCTTGAAAAGAGTTGGTCACACAGAGTTTTTCATCGATGGCCTTGGAAAGTTATTGGTAGCCACATGTAAGGGCTTCTGTATTGGTCATCAGACTCATCAGACATATGACAGCTATGAAAGTTACAGGAATCAAGAAAAAGAGGATGAAAAGAGAAAACTGGCTCATCACTTCTTTAAGAATTATCTCAACTGCATCAAGTACTGA

Function

symbol description
b4galnt2.1 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process and UDP-N-acetylglucosamine metabolic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in membrane. Predicted to be integral component of Golgi membrane. Orthologous to human B4GALNT2 (beta-1,4-N-acetyl-galactosaminyltransferase 2).

GO:

id name namespace
GO:0006047 UDP-N-acetylglucosamine metabolic process biological_process
GO:0019276 UDP-N-acetylgalactosamine metabolic process biological_process
GO:0030259 lipid glycosylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9081 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process and UDP-N-acetylglucosamine metabolic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in membrane. Predicted to be integral component of Golgi membrane. Orthologous to human B4GALNT2 (beta-1,4-N-acetyl-galactosaminyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000094579

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049932 False 1510 mRNA 0.44 10 23063718 23085279
TCONS_00049931 True 1651 mRNA 0.43 12 23063718 23085279

Neighbor

gene id symbol gene type direction distance location
XLOC_025290 nags coding upstream 3597 23029484 ~ 23060121 (+)
XLOC_025289 si:ch211-237i5.4 coding upstream 43167 22999849 ~ 23020551 (+)
XLOC_025288 lsm12a coding upstream 69285 22984098 ~ 22994433 (+)
XLOC_025287 hdac5 coding upstream 87262 22905341 ~ 22976456 (+)
XLOC_025286 BX322574.1 coding upstream 183271 22854673 ~ 22880447 (+)
XLOC_025292 gngt2a coding downstream 7483 23092762 ~ 23096141 (+)
XLOC_025293 NA coding downstream 11163 23096442 ~ 23213329 (+)
XLOC_025294 col1a1a coding downstream 135768 23221047 ~ 23239458 (+)
XLOC_025295 ppp1r9ba coding downstream 162046 23247325 ~ 23348084 (+)
XLOC_025296 NA coding downstream 321192 23406471 ~ 23411521 (+)
XLOC_025429 BX649540.1 misc downstream 7163460 30248739 ~ 30249036 (+)
XLOC_025285 NA non-coding upstream 215522 22846336 ~ 22848196 (+)
XLOC_025283 BX649557.1 non-coding upstream 494612 22568987 ~ 22569106 (+)
XLOC_025276 NA non-coding upstream 901236 22157933 ~ 22162482 (+)
XLOC_025274 NA non-coding upstream 1066160 21929928 ~ 21997558 (+)
XLOC_025298 NA non-coding downstream 432680 23517959 ~ 23524650 (+)
XLOC_025299 NA non-coding downstream 519199 23604478 ~ 23616801 (+)
XLOC_025301 NA non-coding downstream 579882 23665161 ~ 23668197 (+)

Expression


Co-expression Network