G595336 (LOC107579696)


Basic Information

Item Value
gene id G595336
gene name LOC107579696
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30262178 ~ 30262535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU678543
gcgttagcgaggccgaaaggaagaacccggtattcaaagtgccctaacggagtgttaaacgccgtcttccactcgcccccctccctgatgcgcacgagatggtaagcgttacgaaggtccaacttagtgaaaaacctggctccctgcaggatctcgaaggctgaagacataagaggaagcggataacgattcttcactgttatgtcattcagccctcgataatctatgcaggggcgcagagacccgtccttcttcttgacaaaaaaaaaccccgctccggcgggagaggaggaggggactatggtaccggcggcaagagctacagacaaataatcttcgagagccttacgttcgggag

Function

NR:

description
PREDICTED: uncharacterized protein LOC109045530

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU678543 True 358 lncRNA 0.53 1 30262178 30262535

Neighbor

gene id symbol gene type direction distance location
LOC110527639 NA coding upstream 58852 30178397 ~ 30203326 (+)
LOC110527626 NA coding upstream 246126 30009668 ~ 30016052 (+)
LOC110527618 NA coding upstream 278638 29974966 ~ 29983540 (+)
LOC110528937 NA coding upstream 317499 29931825 ~ 29944679 (+)
trnak-uuu-3 NA coding upstream 371227 29890879 ~ 29890951 (+)
LOC110527642 cssa12h20orf85 coding downstream 198824 30461359 ~ 30499559 (+)
LOC110527643 chmp4b coding downstream 246726 30509261 ~ 30536127 (+)
LOC110527644 sahhb coding downstream 299051 30561586 ~ 30578870 (+)
if2b LOC106582627 coding downstream 360949 30623484 ~ 30636008 (+)
LOC110527647 LOC106582629 coding downstream 471048 30733583 ~ 30854816 (+)
G595330 NA non-coding upstream 6948 30254967 ~ 30255230 (+)
G595309 NA non-coding upstream 20417 30241523 ~ 30241761 (+)
G595305 NA non-coding upstream 24686 30237274 ~ 30237492 (+)
G595304 NA non-coding upstream 29454 30232505 ~ 30232724 (+)
G595268 NA non-coding upstream 55296 30206591 ~ 30206882 (+)
G595342 NA non-coding downstream 12054 30274589 ~ 30278354 (+)
G595358 NA non-coding downstream 38058 30300593 ~ 30300873 (+)
G595360 NA non-coding downstream 41103 30303638 ~ 30304269 (+)
G595361 NA non-coding downstream 42571 30305106 ~ 30306266 (+)
G595362 NA non-coding downstream 47468 30310003 ~ 30310657 (+)
G593774 LOC106593940 other upstream 229557 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 733268 29528027 ~ 29528910 (+)
LOC110527619 LOC106578599 other upstream 898827 29329584 ~ 29503787 (+)
G593283 NA other upstream 1197586 29059698 ~ 29064592 (+)
G593171 NA other upstream 1369753 28892163 ~ 28892425 (+)
G596168 NA other downstream 640644 30903179 ~ 30903887 (+)
G596297 NA other downstream 819186 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 1746779 32007023 ~ 32013203 (+)
G599004 NA other downstream 2973278 33235813 ~ 33236636 (+)
G599123 NA other downstream 3027991 33290526 ~ 33295528 (+)

Expression


Co-expression Network