G595612


Basic Information

Item Value
gene id G595612
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30583002 ~ 30583380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU678835
ACTAGAGTGGGGTGGGGGGGAATACTACATGCTCATGGACATAGTGAGAAGAGAAATCACGCTGCAAGCATTGTGTATCCTTTTTGCGTACTCCTAGGGCTGTTTTGTGGACCGAAGTCACTTGAAGTCTTCACATTCAATGTTGACCTAGCTTTCTCTTGCTGTGTTCAGTAGCACACATTAAGTGATCACCACAGCTCATGTTATAATCATTTGTCACTGCGTTTATTTAATATTGGTTCACTTTGCCAGGCACTGAACAGCTACAGAAAGTTTTCacctctttttccacattttgttacagcctgaatttaaaatgaattaaattgagattttgtcatTGGCagacacacaatgccccataatgtcaGTTGTTTtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU678835 True 379 lncRNA 0.40 1 30583002 30583380

Neighbor

gene id symbol gene type direction distance location
LOC110527644 sahhb coding upstream 4132 30561586 ~ 30578870 (+)
LOC110527643 chmp4b coding upstream 46875 30509261 ~ 30536127 (+)
LOC110527642 cssa12h20orf85 coding upstream 83443 30461359 ~ 30499559 (+)
LOC110527639 NA coding upstream 379676 30178397 ~ 30203326 (+)
LOC110527626 NA coding upstream 566950 30009668 ~ 30016052 (+)
if2b LOC106582627 coding downstream 40104 30623484 ~ 30636008 (+)
LOC110527647 LOC106582629 coding downstream 150203 30733583 ~ 30854816 (+)
LOC118965377 NA coding downstream 469246 31052626 ~ 31071618 (+)
LOC118965378 NA coding downstream 488362 31071742 ~ 31073140 (+)
LOC118965379 NA coding downstream 489965 31073345 ~ 31074263 (+)
G595603 NA non-coding upstream 25482 30557287 ~ 30557520 (+)
G595599 NA non-coding upstream 31189 30551607 ~ 30551813 (+)
G595593 NA non-coding upstream 36558 30546007 ~ 30546444 (+)
G595588 NA non-coding upstream 43326 30539469 ~ 30539676 (+)
G595586 NA non-coding upstream 50672 30530480 ~ 30532330 (+)
G595775 NA non-coding downstream 260172 30843552 ~ 30844716 (+)
G595715 NA non-coding downstream 261470 30844850 ~ 30858694 (+)
G596127 NA non-coding downstream 292540 30875920 ~ 30876207 (+)
G596131 NA non-coding downstream 294910 30878290 ~ 30878683 (+)
G596142 NA non-coding downstream 301410 30884790 ~ 30885010 (+)
G593774 LOC106593940 other upstream 550381 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 1054092 29528027 ~ 29528910 (+)
LOC110527619 LOC106578599 other upstream 1219651 29329584 ~ 29503787 (+)
G593283 NA other upstream 1518410 29059698 ~ 29064592 (+)
G593171 NA other upstream 1690577 28892163 ~ 28892425 (+)
G596168 NA other downstream 319799 30903179 ~ 30903887 (+)
G596297 NA other downstream 498341 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 1425934 32007023 ~ 32013203 (+)
G599004 NA other downstream 2652433 33235813 ~ 33236636 (+)
G599123 NA other downstream 2707146 33290526 ~ 33295528 (+)

Expression


Co-expression Network