G595775


Basic Information

Item Value
gene id G595775
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30843552 ~ 30844716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU679009
ctgcgattacagctgtaagtcgcttggggtatgtctatcagttttgcacatcgagagactgaaatgttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttattttttaaccattccattatatattttgctttatgttttggatcattgtcttgttggaagacaactctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttatgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacacttttttatggatatctttaagaaatggctttcttcttgccactcttccataaaagccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttaaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacatgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaatattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggc

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU679009 True 1165 lncRNA 0.43 1 30843552 30844716

Neighbor

gene id symbol gene type direction distance location
if2b LOC106582627 coding upstream 207544 30623484 ~ 30636008 (+)
LOC110527644 sahhb coding upstream 264682 30561586 ~ 30578870 (+)
LOC110527643 chmp4b coding upstream 307425 30509261 ~ 30536127 (+)
LOC110527642 cssa12h20orf85 coding upstream 343993 30461359 ~ 30499559 (+)
LOC110527639 NA coding upstream 640226 30178397 ~ 30203326 (+)
LOC118965377 NA coding downstream 207910 31052626 ~ 31071618 (+)
LOC118965378 NA coding downstream 227026 31071742 ~ 31073140 (+)
LOC118965379 NA coding downstream 228629 31073345 ~ 31074263 (+)
LOC110527653 LOC106582631 coding downstream 359788 31204504 ~ 31716227 (+)
LOC110531742 LOC106594194 coding downstream 1162307 32007023 ~ 32013203 (+)
G595612 NA non-coding upstream 260172 30583002 ~ 30583380 (+)
G595603 NA non-coding upstream 286032 30557287 ~ 30557520 (+)
G595599 NA non-coding upstream 291739 30551607 ~ 30551813 (+)
G595593 NA non-coding upstream 297108 30546007 ~ 30546444 (+)
G595588 NA non-coding upstream 303876 30539469 ~ 30539676 (+)
G595715 NA non-coding downstream 134 30844850 ~ 30858694 (+)
G596127 NA non-coding downstream 31204 30875920 ~ 30876207 (+)
G596131 NA non-coding downstream 33574 30878290 ~ 30878683 (+)
G596142 NA non-coding downstream 40074 30884790 ~ 30885010 (+)
G596150 NA non-coding downstream 47649 30892365 ~ 30892638 (+)
G593774 LOC106593940 other upstream 810931 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 1314642 29528027 ~ 29528910 (+)
LOC110527619 LOC106578599 other upstream 1480201 29329584 ~ 29503787 (+)
G593283 NA other upstream 1778960 29059698 ~ 29064592 (+)
G593171 NA other upstream 1951127 28892163 ~ 28892425 (+)
G596168 NA other downstream 58463 30903179 ~ 30903887 (+)
G596297 NA other downstream 237005 31081721 ~ 31082290 (+)
G599004 NA other downstream 2391097 33235813 ~ 33236636 (+)
G599123 NA other downstream 2445810 33290526 ~ 33295528 (+)

Expression


Co-expression Network