G596197


Basic Information

Item Value
gene id G596197
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30989872 ~ 30992267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU679455
GGTGTATTCAACATTTATTTGTCATTTTAAAAAACATTGAAGATTCTCAAAATATAAATAcgtctctcccacacacacacaataagctGTACacatgcgctcacaCACACACTTTCACTCAACACAGGCCCCTGAATTGGATCTCAAAATGTGCAATCACAACAAAAGAACAATAAACTGCATCATTTGGTCTCCTTAAGTAGTCCTCTCAACGACGGTCAGAGATTCCATCaatctggggtgtattcactaggaaccaaacgagACAACTTGGAGTGACCTAAATAAATTTTCAAATAAGACTCATTTCAGTTGCAAAAAGTCTTCTATAGCAAAACTttttgcactaatgaatacacccttgaACACACATTAAAAAACACATTCAACCTGCTCGGGTCCAATGTCATAgcaaataattatgtaaatgaagGGTCCATGATTGATCAAAGAGATTAGAAATTAAAAGGATGGGATAAACATGTCCATGACAGTACATTTAGGGTAGATGAGAATGGCAAAAAaggtatatacactgaacaaaaataagcgcaacatgtaaagtgttggtcccatgtttcatgagctgaaatacaatATCCCAGAAATAaggacaaaaagcttatttctctcaaatgttgtgcacaaattggtttatGTCACTgtttgagcatttctcctttgccaagataatatccatccacctgacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtacaacGTGTGCTGGGGAAAATTAAAGGCCActtaaaatgtgcaattttgttacattatacaAAACCACAGAtctctcaagttgagggagtgtgcaattggcatgatgactgcaggaatgtccaccagagcagttgccaaaaaaatgtaaagttcatgttttagagaatttggcagtatatcCGACCGGCCTcgcaaccacgccagcccaggacctccacatccagcttcttcacctgtggaatcgtctgagaccagcagcccagacagctaatgaaactgtaggtttgcacaaccgaagaatttctgcacaaactgtcggaaaccgtctcagggaagctcatctgcatgcgtGTCATCCTCACCacggtcttgacctgactgcagtttggcgttgtaactgacttcagtggccactggcacgctggagaagtgtgctcttcatggatgaatcccgatttcaactgtaccgggcagatgtcaGACAGCGTGTATGCCGTTATGtcggtgagtggtttgctgagtgccccatggtggcggtggggttatggtttcggcaggcataagctacagacaactaaCACAACTGCTTTTTAAAGCAGTGATGAAGACCTTGAGGCTGATACATAaagcttaataaagagcagtgatactagcaagaacATTGCGCAGGTTTCTTCTTTTTTCTCACCGATGGCAAGTTGAATGtcatgacaagatcctgaggtccattgtcactcctgtttcagcatgataatgcacagccccattcctggaagctgaacatgtcccagttcttccatggcctgcactcagacatgtcacccgttgtGCCCGTTTGGGATGCCCTGGATCAAGGTttaagacagcgtgttccagttcctgcgaatatccagtaactttgcatagctattgaagaggagtgggacaacattcctcgGACTgcaatcaacagcttgatcaactctatgcgaaagaGATGTTGCTCTACAtgatgcaaatggtggtcacaccatatactgactggttctgatccacgcccctacctttaagGTATCTCTGACCAGATGCATAtcagtattcccagtcatgtgaaatccagattagcgcctaatgaatttatttttgaTTGACTTTTCCTTATATGTACTGTAAATCAGtacaatctttgaaattgttccatgttgtgtttatatttgttaCGTGTATATGGGAAGCAACTAATAGATACAATGTGCTTGGACTGGGGATGAATCAAATGTGATCAAAAACATCTGTTAAATCACTCTTCTGTCCAGTGATTTGGTCTTTCATTCTTTGTATGGATAAGGgatgtaaaaacaaaaataactAAATGGGAGACTTAGCGGTCAAATTTCCTTCCAATATTGAGGGAGATTATTCTGATTTTGTTTATTGCCATGTTAGTTAGCATCAGTTTGTAGTCACTTCCCTTTTACAGATAGGCCCTTCCGGAGAATGATGAACAGTCTGGTTTGCCCTTGTGCAAAACACTCCACTAAGATGCCTTGCCCAgttcaatcttcttctggatggCTTTTGCCGAGTGGTATATCAAGGAATCAATTAGTCCAGC

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU679455 True 2354 lncRNA 0.42 3 30989872 30992267

Neighbor

gene id symbol gene type direction distance location
LOC110527647 LOC106582629 coding upstream 135056 30733583 ~ 30854816 (+)
if2b LOC106582627 coding upstream 353864 30623484 ~ 30636008 (+)
LOC110527644 sahhb coding upstream 411002 30561586 ~ 30578870 (+)
LOC110527643 chmp4b coding upstream 453745 30509261 ~ 30536127 (+)
LOC110527642 cssa12h20orf85 coding upstream 490313 30461359 ~ 30499559 (+)
LOC118965377 NA coding downstream 60359 31052626 ~ 31071618 (+)
LOC118965378 NA coding downstream 79475 31071742 ~ 31073140 (+)
LOC118965379 NA coding downstream 81078 31073345 ~ 31074263 (+)
LOC110527653 LOC106582631 coding downstream 212237 31204504 ~ 31716227 (+)
LOC110531742 LOC106594194 coding downstream 1014756 32007023 ~ 32013203 (+)
G596207 NA non-coding upstream 53423 30936185 ~ 30936449 (+)
G596184 NA non-coding upstream 74422 30915249 ~ 30915450 (+)
G596165 NA non-coding upstream 87624 30902003 ~ 30902248 (+)
G596163 NA non-coding upstream 88928 30900496 ~ 30900944 (+)
G596160 NA non-coding upstream 90353 30899207 ~ 30899519 (+)
G596265 NA non-coding downstream 32354 31024621 ~ 31025043 (+)
G596327 NA non-coding downstream 135054 31127321 ~ 31132421 (+)
G596472 NA non-coding downstream 148006 31140273 ~ 31140492 (+)
G596804 NA non-coding downstream 585257 31577524 ~ 31577843 (+)
G596805 NA non-coding downstream 585679 31577946 ~ 31578145 (+)
G596168 NA other upstream 85985 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 957251 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 1460962 29528027 ~ 29528910 (+)
LOC110527619 LOC106578599 other upstream 1626521 29329584 ~ 29503787 (+)
G593283 NA other upstream 1925280 29059698 ~ 29064592 (+)
G596297 NA other downstream 89454 31081721 ~ 31082290 (+)
G599004 NA other downstream 2243546 33235813 ~ 33236636 (+)
G599123 NA other downstream 2298259 33290526 ~ 33295528 (+)
G600013 NA other downstream 2974022 33966289 ~ 33966755 (+)

Expression


Co-expression Network