XLOC_025299


Basic Information

Item Value
gene id XLOC_025299
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23604478 ~ 23616801 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052660
TCCCGCCCTAAAGATTTTAGAGGACGGGGTAACTGAAAAATTAACGTTACACTAGCTGTTGAACATCTCTAGAGGGCGACATGTACTCCTTTCCTTTTAAAATATGAGGGCAAGTCAGCTAGCAAAGggatttatttaacaatatttatgCGAATACTTTGAAGATTTGCCTTAAATATATTGGTAACGGCAGCTATCCTTAAGTTACTTGTTAATTATTTCATAACTCCGTCGAGTAAATATGAGGACAGTGTTAACGTTACATCCATTTCACCTAGCCTGTTCAATTGTAACTTGTTAAATGAGATTTCACTGGTTCATATAGGAAGCTGCTTCATTGATGCAGaaaaagAAAACCTTTAGAGTCTACAGACCAGCTGCTCATTTCTGGAGTGAGAAAAAGAGACAGATGGGGGAGGGAAACACATGGTTACAGCTTGTTGTAAATAAGACTCATCCCGTCCTTTtgatgttacacacacacacacacactaacatgtAAGAACgcacgcgcacacatacacacacacagagtcatcTGAGCATTAGATACACTCACTTACATGAATGCATATCTAATCCATGACTCATGTGACAGGTTTGATGGAAATCCAGCCTCCTAAATCCTCCCATCAGCTAGGTTCAAGAAATATTTCACCACTCCATATAATAGCACAATAATAATACACATAATCAATAGAACAAATGCCTATGATTCGCTTCACAACCATCCCCCACGAACCTTTTCTCCCAGACTTCAGCTTCATCCATGTCAGCGCAGTGAGCAAGTGCTTTCCCGAGGAGCGGCTGCTGTTTTTTTAATGGGCTGAGAGGGATGTGAAGAGCCCGAGCAGTCATTCAAAGTATTATTACACTCCTGGGCTGCACACTGCCTGCTTGGCCCCCTTGCTGAGGTCGTAGAAGATGGATGGCTCACTGGAGCAgcaattaataatgtttttacaaGAGCAATGGAGGCGTGCGCAAGCCACCGACGGATTGGGCAGAGTATTGAAATGTGCAGGTGAATTGATTGGCCCTTCGAATTTCCTGTAGAAATCATTTGGATTAATTGAAAGCAGTGGGAGGGAGGAGGGAAGGCGCGGGGCTGCATATTGATTTATAGGTCTCACTCAGAacgagaagaagaagaggaggaagataAAATGGCCACCGTGCTCCCAGAAACATAATGAGGTGATTTTAGGTTGGGTGGCATTCAGCAATTGTCGGTCTGGTGTGGAGTGACGTCAAAACCCAGGAAGAATAATTCAGCTCCTATATCCTTGAGGTTTATAAAATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052660 True 1303 lncRNA 0.43 3 23604478 23616801

Neighbor

gene id symbol gene type direction distance location
XLOC_025298 NA coding upstream 79828 23517959 ~ 23524650 (+)
XLOC_025297 nr1d1 coding upstream 108255 23488652 ~ 23496223 (+)
XLOC_025296 NA coding upstream 192957 23406471 ~ 23411521 (+)
XLOC_025295 ppp1r9ba coding upstream 256394 23247325 ~ 23348084 (+)
XLOC_025294 col1a1a coding upstream 365020 23221047 ~ 23239458 (+)
XLOC_025300 hoxb13a coding downstream 37432 23654233 ~ 23655834 (+)
XLOC_025301 NA coding downstream 48360 23665161 ~ 23668197 (+)
XLOC_025302 hoxb10a coding downstream 52466 23669267 ~ 23671863 (+)
XLOC_025303 mir196b coding downstream 56576 23673377 ~ 23673455 (+)
XLOC_025304 hoxb9a coding downstream 60550 23677351 ~ 23682436 (+)
XLOC_025429 BX649540.1 misc downstream 6631938 30248739 ~ 30249036 (+)
XLOC_025293 NA non-coding upstream 391149 23096442 ~ 23213329 (+)
XLOC_025286 BX322574.1 non-coding upstream 724031 22854673 ~ 22880447 (+)
XLOC_025285 NA non-coding upstream 756282 22846336 ~ 22848196 (+)
XLOC_025311 dre-mir-10c non-coding downstream 103850 23720651 ~ 23720745 (+)
XLOC_025313 NA non-coding downstream 313645 23930446 ~ 23967966 (+)
XLOC_025316 dre-mir-152 non-coding downstream 479156 24095957 ~ 24096036 (+)

Expression


Co-expression Network