XLOC_025301


Basic Information

Item Value
gene id XLOC_025301
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23665161 ~ 23668197 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052661
TGTTTAGCCAAACTCCGCAATAGTATTAAAGTTTACAAATTAATGTGTTAATATTTGCTTGTTCATTTGGCTTGTTCACAGTGAGCATGATGTGTATAATTAGGTTTCGCATGACTTTAAATACGAAAGGCAATGTAAGTATAATCGTTTTTGATCACGCTGCCTCCTGCTGGCGAATGAAAGTCAAAACGAAGAAACGTAGGATTTGGCAGCTGGAGGTGTACACAACTGTAAAACAATCGTGTATTTTCCTAATTCCAAAGGTCAAACGGATTGGTACAATGTATGAGAAACGCACCTAGGAGGGAACGCCTAATTCTGcagtaaattgttttaaattatatttattttaaaatatgctagTGATAATTAATTTAGCGTAAATATAAAACTTTCTTGCGCAGTACTTCATGTAAACAGCTAGCCTATATATGTTTATAATACAATATAGCTATACGAACACAACACCCCCAACAAATACTTCTCGTACGTCtgtgcatatatatttaaatatctctGACTGCAACACAGTTAAAAAATGTTGCGGTCTTTCCATGAAGCTAACTATTATACAAAAGTATATGCATAGCTGACACATATAACTGCGACGCTCACAGAACATGCTGCTCATATCAGTTATGTTGCTTAATGCATTTGAACTTGTAATTGTTTGCAGATCTGGCATAGATCCTTGCACAGTTGTACTTTTGTCTCATCGCCAAGACATTCGCTACACATCTTTTGAGGATTATATGCAAAGCTTTAATGGTGAGCATTTCGTCTCCAGCCTCTGCACAGATGTTAGAGAaattatgtattttgtgtttcGCATTAGCGGATCTATCTTCACATGGTTCTTCTGTGGAGCACATTTTGAAGGTAATCGCTTTAGATTAGCTAGGACATCAAGTAGCCTAGTAGTATAAGGTCATCAAGGAATAAAGTTGTATATAAGgtttaatttaatgcaattaatATAAAGTTAAATGATTACATAAGCACGAATAatttatcaattatttaaataaacactcaTTCTCGGTTTACACTTTAAGGTGTAGGCTATTATTTATAAATGGTTCTAAACTAATGCCACAAAAGAGTTTTCCATGCTTAAGTCCATGCTTTTAGAGTTAAAATTGCCCGCTAATCTACTCTCAATGcgtatactactactactactactactattaataataataataataataataatataaacttatTTCGTATTCTTGCTACACCTCAAACAATGTTTGCAAATCAGACCGACCTAAGGAAATAATCTGTTAATTATTCAACCACAATCTTGAACTTTATTAGGGGGAAAACACTGAATTAGCTCACTCTTCTCTGCTCCACACACCAGACACATGCTATTTAGAGACGGCTTGGCAGTAAAACTTTACAGCAAATGGGGTGGCTTGGTTGTCATGGTTACAGTTATACGAGTTTGACCGAAGATCTTCTCACCATTTGGAAGGGGCCAGCGATTCTGTTTGTGATTATAAAACCGGAATGTGTAGAATATATGAAAAATCTACCAGGTTTCCTTTCCTTTCTCGTTATTCTAAAGGCAGTCGTGGAGGAATAGCATGCGGTCTTATGGATGTGTTCAAAAAGCGTGTTAGTCAGAAAATGGCATTCAGAGACCATGGCGGTCAAAAAATGTGAAATAGTTTTAGTGCAGCACGCCAGACAAAAAGTAAACAACTGGTCGAGACAGGTGATGTCAACGTCAAACTTTTACAGCAAGCCATCATTCGTGGGACATCGAAGGCCAAAGGCCTTTTCGCTCCGAAGCTTTTTGGATTTATGAAAACTTTAGGAAACatatttatacagttttattCTACAGATGTAAAAAAGAACGACTGGAGCACAATGTAAGCTTTTACTATATTTATACACATGttctttgttcttgttgcttatttattaatatagtggTCAGTGATTATGAGCGTGACAATGCTTGTTTCTAAATTAAGAGTCTACCTTGctttttaatggatttttttcaCAATTGAAAAATACGAAATGTTAGTTCTAGACTTTTGTGAAAAATATTTGTGTCATATTTGTCTTTGCATTAAATGCTGCACTCAAATACAGCACgctcaaaaattatttaaaatttaaatcaaattagCAACGGCATAGCCTACGTGCTGAGAATATTTGACATTTAAGCTAAATAACTTATTGGAACCCAGGatgtatacttttaaaaatattagtttattcatCTTGTATATTATGTCGAAAAGCTTGACGTCGAAAAGCTTGACGTCGAGTGCGCACTTTATGAACAAAACGGGTTTCACGCGAGAAACGGTGGTTATTTTATTCTTTCGTTTGATGCTATTTAATGTGAGAATGTCATgagcaaataaataattttaaataactaacaAGATTACATTTAGCAATAGATGTAGCACGTAGCTTGACCCTGATATTCACGTGCCTGTATTACTAAAATCTACAATGAGATCAGACCGAGAAATTTGTTAAGATGTAGGCCTATGCAAAGCTTTTGTAAAATGTATGCTAAAATGACTGGCTTAGTTAATGTTTGCATTAATTAGGGCTGGTTTGTATCTatcaaatttgtttatatttccaGTCTAAAATATTGTGTGGACAGCAGTTTTCAAATGATTTCAAATCTCACCGTAAATCTAAAagtatttctttattctttatttacagATGCACAATTGTTGAAACAAAAAGACAAACTCACGCTTCTAAAGCCTTCATCGGTGTAGTAATTATTTAACCGAAAAAAAAGCTAACAAGCTTGCATGCTGTTATTTTCAGAACGTTTTGTTcgtcttttaaataaaaaaataacaaataattagtcataaattaaatgcatgaaatatcataaattaaaaactaagAGCAAGCTGTAAAAAACGTATTGTtcgactttttaaaaatataaatttgttattaaatgaccaacaaataacataaaattaCCAAAATTAAAAGATCAGACTGTTATATTTTTAGAACGTTTTGC
>TCONS_00052662
TTCGTATTCTTGCTACACCTCAAACAATGTTTGCAAATCAGACCGACCTAAGGAAATAATCTGTTAATTATTCAACCACAATCTTGAACTTTATTAGGGGGAAAACACTGAATTAGCTCACTCTTCTCTGCTCCACACACCAGACACATGCTATTTAGAGACGGCTTGGCAGTAAAACTTTACAGCAAATGGGGTGGCTTGGTTGTCATGGTTACAGTTATACGAGTTTGACCGAAGATCTTCTCACCATTTGGAAGGGGCCAGCGATTCTGTTTGTGATTATAAAACCGGAATGTGTAGAATATATGAAAAATCTACCAGGTTTCCTTTCCTTTCTCGTTATTCTAAAGGCAGTCGTGGAGGAATAGCATGCGGTCTTATGGATGTGTTCAAAAAGCGTGTTAGTCAGAAAATGGCATTCAGAGACCATGGCGGTCAAAAAATGTGAAATAGTTTTAGTGCAGCACGCCAGACAAAAAGTAAACAACTGGTCGAGACAGGTGATGTCAACGTCAAACTTTTACAGCAAGCCATCATTCGTGGGACATCGAAGGCCAAAGGCCTTTTCGCTCCGAAGCTTTTTGGATTTATGAAAACTTTAGGAAACatatttatacagttttattCTACAGATGTAAAAAAGAACGACTGGAGCACAATATGCACAATTGTTGAAACAAAAAGACAAACTCACGCTTCTAAAGCCTTCATCGGTGTAGTAATTATTTAACCGAAAAAAAAGCTAACAAGCTTGCATGCTGTTATTTTCAGAACGTTTTGTTcgtcttttaaataaaaaaataacaaataattagtcataaattaaatgcatgaaatatcataaattaaaaactaagAGCAAGCTGTAAAAAACGTATTGTtcgactttttaaaaatataaatttgttattaaatgaccaacaaataacataaaattaCCAAAATTAAAAGATCAGACTGTTATATTTTTAGAACGTTTTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052661 False 3037 lncRNA 0.33 1 23665161 23668197
TCONS_00052662 True 982 lncRNA 0.35 2 23666387 23668197

Neighbor

gene id symbol gene type direction distance location
XLOC_025300 hoxb13a coding upstream 9327 23654233 ~ 23655834 (+)
XLOC_025299 NA coding upstream 48360 23604478 ~ 23616801 (+)
XLOC_025298 NA coding upstream 140511 23517959 ~ 23524650 (+)
XLOC_025297 nr1d1 coding upstream 168938 23488652 ~ 23496223 (+)
XLOC_025296 NA coding upstream 253640 23406471 ~ 23411521 (+)
XLOC_025302 hoxb10a coding downstream 1070 23669267 ~ 23671863 (+)
XLOC_025303 mir196b coding downstream 5180 23673377 ~ 23673455 (+)
XLOC_025304 hoxb9a coding downstream 9154 23677351 ~ 23682436 (+)
XLOC_025305 hoxb8a coding downstream 19712 23687909 ~ 23690481 (+)
XLOC_025306 hoxb7a coding downstream 23650 23691847 ~ 23696208 (+)
XLOC_025429 BX649540.1 misc downstream 6580542 30248739 ~ 30249036 (+)
XLOC_025293 NA non-coding upstream 451832 23096442 ~ 23213329 (+)
XLOC_025286 BX322574.1 non-coding upstream 784714 22854673 ~ 22880447 (+)
XLOC_025311 dre-mir-10c non-coding downstream 52454 23720651 ~ 23720745 (+)
XLOC_025313 NA non-coding downstream 262249 23930446 ~ 23967966 (+)
XLOC_025316 dre-mir-152 non-coding downstream 427760 24095957 ~ 24096036 (+)
XLOC_025317 NA non-coding downstream 453004 24121201 ~ 24133485 (+)

Expression


Co-expression Network