G597787


Basic Information

Item Value
gene id G597787
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32414366 ~ 32417474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU681094
ccataacatgatgcagcccccaacggatgtgttatggctttacaccccctgctataatgtggctAAATAGTTACttttctaacagaacacagagggtgttctttaatggaagcctctcaaatataatccagttagaatcaggaattccccagggtagctgtttaggccccttgcttttttcaatttttattaatgacatgccactgactttgagcaaagtcagagtttctatgtatgcggatgacttaGCACTATatacgtcagctactacagcaactgaaatgtctgcaacactcaacaaagagctgcagttcgtttcagagtgggtggcaaggaataagttagccctaaatatttccaaaactaaaagcattgtatttggaacaaaacactcactacaCCCTAAACCTCAATAagtcttgtaataaataatgtggaaattgagcaagttgagatgactaaactgcttggagtaacaccagattgtaaactgtcatggtcaaaaaatattgatgcagtagtagctaagatgggagaagtctgtctataataaagtgatgctttgccttcttaacaacactatcaacaaggcaggtcctacagaccctagttttgtcacaccttgactactgttcagtcgtgtggtcaggtgccacaaaaaaggacgtaggaaaattgcaattggctcagaacagggcagcacagcagGCCCTTGggtgtacacagagagctaatattaatcatatgcatgtcaatctctcctggctgaaagtggaggagagatagacttcatcactacttttatttatgagaggtattgacatgttgagtgcaccgagctgtctgtctagcacatagctcggacacccatgcataccccacaagacatgccacaagaggtctcttcacagtccccaagtccagaacagactattggAGGCAcatagtactacatagagccatgattacatggaactctattccacatcaagtaactgacacaagcagtaaaatttgatttaaaaaaacagattaaaaaacagacacatgcatatatacacacacacacacacatagtaacatatgcactatacatacacatggatttagtaatatagatagatatatggtagtggtggagtaggggcctgagggcacacagtgtgttgtgaagtctgtgaatgtattgtaatgttttaaaattgtattaactgccttaattttgctgcaccccaggaagagtagctgctgctttggcagctaatggggatccataataaatacaaatacagatgaagtagtcattcaaaaagcatgtttaacactattattgcacacagagtgagtccatggaattagtatgtgacttgttaagcacatttttactcctgaacttatgtaggcttgccataacaactTACTTATTGACTCgggacatttcagctttaaatttttattaatttgtaaaaaggaaaaacataattccactttggcatTGTATGTAGGCCATTGACAAAAAATATCtcaattttatccattttaaattcaggctgtaacacaacaaattgtggaaaaagttttaggggctcccgagtggcgcagtggtctaaggcactgcatctcagtcctagaggtgtcactacagaccctggtttgattccaggctgtttcacaactggccgtgatttggagttccataggacggcgcacaattgtcccagcatcatccgggttacgGTTTGGCCGTGgcagggcgtcattgtaaataggaatttgttcttaacgtacttgcctagttaaaataaaggttaaataaacattgtctgaatactttctgaaggcactgtaagtacaaTATTGTAAGATACAATACACGATTACAAGACGGAatgtattcagatcccttgactttctccacattttgttacgttacagccttattataaaatttattaaataaaaaaaagcctcgtcaatcttcacacaataccccataatgaaaaagcaaaaactgttttttagaaatatttgcaaatgttagtttttttaaacagatactttatttacataagtatttagatgccaaattgagctcaggtgcatcctgtttccattgatcagctTTTTGATCAGCCTAGAAACATTCCATTGATGTTTCTAAAaaatgattggagtccacctgtgataaattttAATGGCACACACTGTCTAAAAAGTTTTACagagttgaccgtgcatgtcagagcaaaaaacaagctaTGAGgtaaaaggaattgtccgtagagctcagaaacaggattgtatcgaggcacagatctggggaagggtaccagaaaatgtctgcagcattgaaagtcccccaaaacacagtgtcctccatcattcttaaatggaagacgtttggaaccactaaAAAATACTCTTCCcagagccaaactgagcaatcgagggagaagcgccaataacctgatggtcactctgacagaactccagagttcctctgtggagatgggagaatcttccggaaggacaaccatctctgcaggactccaccaatcaggtctttatggtagtagagtggccagacagaagccgctcctcagtaaaaggcacatgacagtccacttggagtttgccaaaaggcacaagattctctgctctgatgaaaccaagattgaactctttggcctgaatgccagggactgggagattagtcaggatcaagagaaagatgaacggagcaaagtacagagagatccttcatgaaaacctgctccagagcgctcaggacttcagactggggcgaagtttcaccttccaacaggacaatgacccaggagtggcttcaggaaaagtctcaatgtccttgagtggcccaaccagagcccggacttgaacccaatctaacatctctggagagacctgaaaatagctgtgcagcaatgctccccatccaacctgactgagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccatggttgtggcgtcatacccaagaagactcaaggctgtaatctcttTCAAAAGTGtgtcaacaaagtgctgagtaaagggtctgaaaa

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU681094 True 3109 lncRNA 0.41 1 32414366 32417474

Neighbor

gene id symbol gene type direction distance location
LOC110527657 rbm39 coding upstream 6368 32345648 ~ 32407998 (+)
LOC110528942 NA coding upstream 156972 32196966 ~ 32257394 (+)
LOC110531742 LOC106594194 coding upstream 401163 32007023 ~ 32013203 (+)
LOC110527653 LOC106582631 coding upstream 698139 31204504 ~ 31716227 (+)
LOC118965379 NA coding upstream 1340103 31073345 ~ 31074263 (+)
nfs1 nfs1 coding downstream 50539 32468013 ~ 32480794 (+)
rbm12 rbm12 coding downstream 63462 32480936 ~ 32492404 (+)
LOC110527660 LOC106565032 coding downstream 71393 32488867 ~ 32519712 (+)
fer1l4 LOC106582641 coding downstream 106336 32520230 ~ 32620619 (+)
unm_sa1614 LOC108424671 coding downstream 232067 32649541 ~ 32765702 (+)
G597794 NA non-coding upstream 779 32412729 ~ 32413587 (+)
G597798 NA non-coding upstream 2012 32411928 ~ 32412354 (+)
G597793 NA non-coding upstream 62035 32341595 ~ 32352331 (+)
G597646 NA non-coding upstream 381165 32032947 ~ 32033201 (+)
G597632 NA non-coding upstream 392423 32021735 ~ 32021943 (+)
G597790 NA non-coding downstream 167 32417641 ~ 32418797 (+)
G597908 NA non-coding downstream 13707 32431181 ~ 32431414 (+)
G597914 NA non-coding downstream 22203 32439677 ~ 32439878 (+)
G597919 NA non-coding downstream 27644 32445118 ~ 32445345 (+)
G597921 NA non-coding downstream 30695 32448169 ~ 32448399 (+)
G596297 NA other upstream 1332076 31081721 ~ 31082290 (+)
G596168 NA other upstream 1510479 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 2381745 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 2885456 29528027 ~ 29528910 (+)
G599004 NA other downstream 818339 33235813 ~ 33236636 (+)
G599123 NA other downstream 873052 33290526 ~ 33295528 (+)
G600013 NA other downstream 1548815 33966289 ~ 33966755 (+)
G600431 NA other downstream 2341873 34759347 ~ 34759658 (+)
G600531 NA other downstream 2553654 34971128 ~ 34971405 (+)

Expression


Co-expression Network