G598382 (nfs1)


Basic Information

Item Value
gene id G598382
gene name nfs1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32469380 ~ 32480790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU681718
GCCGAATCAAATTTTTATTGGAGTGCTAGCTACAAacatatgcatgtatgtatgtattatgtGAGATTAGATTGCTGTTGGACATTATGGAAAGACATTTTGGGAAGAGTAATGAGTCTGTACATGCAGCAGATGGCACAGCAAACAGAAACAACAAGCACTGTAAATGTTCAGTCACGGTGGTGGTAGATTATACTGATGTCATAAAACAGCTGGCCATGTAAATGGTTTTGCATACTTCCCTCACAATACATTTTCAAATCAGTTTAAATGATAACATGCAAGATTCATACAAACAATACACATTTTGCCAGAGACTGTATACAAACCAACTGGGGAGAATTTCCATGATTGGAAGACTGTTAACCTACAAGATTGGCATTACATTTCACACATTGAGATAAAggaaatatttaatcaatttcctCCTTTAGTGACATGAAACCTGTACTTTAACCTTGTTAGCATGCTGTCAACGTATAATGACTTATCCATGAACTAAATGGAATCTTGCACATGCTACATGAATTAACCATTCTGTAACTTGCTCTCAGTCATGGAATCCCATGGTCAAAGCAGCTGATAAATTATGTTAAGAGCACTTGTAAAGAACAGGAAGGTATGCACACAAATTTATGCTCCCAATTAAATGCTTTAAGGGACTTTGTTCTTTACAAGGTTTCTTTATTAGCCCAGCACCTACATTTTTAAGGATGTGCGTATGAACAAACTTTAACTACTGCACAATATATGCATCAATAATAATACTTTGTCAAATACAAAAGGAACCAATTATTCAGGTCTACCAATACAAAATCTAGTCATAAGCCTACACTAAAGTAAGTCAGGAAGTTGTGCGTGTTTCTTGACAGTAGAAATAATTACCACTCATCACAGGAGTGGCATAGTATGCAGCAAACTAAACAAGCTTAGTATTCACAATGCTCTTAGGTATGTTTCCTGAAGGCTTTCTTTAGTGCTGCGTCCATTTGATGCTCTTCAGATCGATTCCTTCTTGCACCATCTCCCACAAGGGGctcatctctctcagGCGTTTGACCTGCTGAATGCACTTGTCCGCTGTATAGTCCACTTCTGCCTCCGTGCTAAATCGTCCGATTCCAAATCTGATTGAGGAGTGGGCCAGGTCCTCATCTGTTCCAATAGCTCTCAAGACATATGAAGGCTCCAATGAAGCAGAAGTGCAGGCACTGCCAGATGATAGAGCGACATCCTTCAGGGCCATCAACAGACTCTCTCCCTCCACGTAGGCAAAGGACAAATTAATGCATCCTGGGTATCTTTGCTCCGGGTCACCATTCATCACAACATCAGGGATCTCTGACATGATTTTGCGCACAAGGCGGTTTGCCAACATGGACACCCGGCTGTGATCATACTCTAGCTCCTGCTGGGCTATATCACAGGCTGCTCCCAGTCCCACAGCCAGAGGAGTGGGCACTGTCCCTGAGCGAAGCCCCCTCTCCTGGCCTCCACCATTCTGCAGTGGCTCCATTCGAACCCGGGACCATATATTTTGTGCCCGCTGATGGACATCAGGTCTACCTTCCAGTCAGATACATTGATGGGGATTTTTCCCACAGCTTGAGCTGCATCAGTGTGGAAGAACACGTTCCTTGACCGGCAGATTCGACCTATGTCTTCGACAGGCTGCCTCACACCAATCTCATTGTTCACGGTCATCACAGACACCAAACTTGTGTCTTGACGAATTGTTCCCTCCAGCTGTAGGTCAACCAAGCCATTAGTCTTCACGGGAAGATAGGTTATGTCAAAGCCCTCTGCTTCCAAGACTCGACAGGAGTCCAGCACACACTTATGCTCCGTCTGAGTGGTGATCACATGCTTCTTCTTAGATTTGTAAAATCGGGCCACACCTTTGATTGACATATTATTGGATTCAGTGGC

Function

symbol description
nfs1 Predicted to enable cysteine desulfurase activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within [2Fe-2S] cluster assembly. Predicted to be active in cytosol; mitochondrion; and nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human NFS1 (NFS1 cysteine desulfurase).

NR:

description
cysteine desulfurase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU681718 True 1929 lncRNA 0.43 10 32469380 32480790

Neighbor

gene id symbol gene type direction distance location
si:ch211-15p9.2 LOC106582638 coding downstream 44730 32421664 ~ 32424650 (-)
psmf1 psmf1 coding downstream 146222 32305811 ~ 32323158 (-)
LOC110527655 tmem74b coding downstream 176129 32288164 ~ 32293251 (-)
bc10 bc10 coding downstream 202735 32261170 ~ 32266645 (-)
LOC110527654 LOC106582632 coding downstream 294844 32075882 ~ 32174536 (-)
LOC118965410 NA coding upstream 63168 32543958 ~ 32544012 (-)
LOC110527664 LOC106582643 coding upstream 311390 32792180 ~ 32822397 (-)
LOC110527666 if6 coding upstream 417556 32898346 ~ 32913140 (-)
fam83c fam83c coding upstream 461116 32941906 ~ 32950746 (-)
LOC110527668 LOC106582647 coding upstream 479069 32959859 ~ 32998873 (-)
G598423 NA non-coding downstream 2445 32466620 ~ 32466935 (-)
G598419 NA non-coding downstream 5736 32463402 ~ 32463644 (-)
G598418 NA non-coding downstream 6003 32463139 ~ 32463377 (-)
G598411 NA non-coding downstream 14674 32454489 ~ 32454706 (-)
G598409 NA non-coding downstream 17189 32451899 ~ 32452191 (-)
G598430 NA non-coding upstream 18639 32499429 ~ 32500269 (-)
G598383 NA non-coding upstream 37985 32518775 ~ 32519903 (-)
G598570 NA non-coding upstream 242731 32723521 ~ 32723737 (-)
G598578 NA non-coding upstream 251770 32732560 ~ 32732777 (-)
G598581 NA non-coding upstream 253401 32734191 ~ 32734513 (-)
G598354 NA other downstream 49232 32418190 ~ 32420148 (-)
G596433 NA other downstream 1390062 31078512 ~ 31079318 (-)
G596352 NA other downstream 1532766 30936165 ~ 30936614 (-)
G596039 NA other downstream 1606060 30862857 ~ 30863320 (-)
G596094 NA other downstream 1624756 30844181 ~ 30844624 (-)
G599058 NA other upstream 757257 33237359 ~ 33239795 (-)
G599788 NA other upstream 1195289 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 1289260 33770050 ~ 33774908 (-)
G600721 NA other upstream 2133702 34614492 ~ 34614875 (-)
G600872 NA other upstream 2484657 34965447 ~ 34966786 (-)

Expression


Co-expression Network