G598929


Basic Information

Item Value
gene id G598929
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33117420 ~ 33122034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682305
gtttacataccacTCAATTCATAtttcgtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtgaatttaggcccaatcctcctgacagagctggtgtaactgagtcaggtttgtaggccttgctcgcacatgctttttcagttctgcccacaaattgtctataggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaggccatttttccacaactttggaggtatgcttgggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccatataattttcttgcctcatgatgccatctattttgtgaagtgcagcaggccctcctgcagcaaagcacccccacgaaatgatgctgccaccccc
>TU682307
gtttacataccacTCAATTCATAtttcgtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtgaatttaggcccaatcctcctgacagagctggtgtaactgagtcaggtttgtaggccttgctcgcacatgctttttcagttctgcccacaaattgtctataggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaggccatttttccacaactttggaggtatgcttgggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccatataattttcttgcctcatgatgccatctattttgtgaagtgcagcaggccctcctgcagcaaagcacccccacgaaatgatgctgccaccccc
>TU682308
gtttacataccacTCAATTCATAtttcgtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtgaatttaggcccaatcctcctgacagagctggtgtaactgagtcaggtttgtaggccttgctcgcacatgctttttcagttctgcccacaaattgtctataggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaggccatttttccacaactttggaggtatgcttgggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccatataattttcttgcctcatgatgccatctattttgtgaagtgcagcaggccctcctgcagcaaagcacccccacgaaatgatgctgccaccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU682305 False 475 lncRNA 0.45 2 33117420 33122034
TU682307 False 475 lncRNA 0.45 2 33117420 33122034
TU682308 True 475 lncRNA 0.45 2 33117420 33122034

Neighbor

gene id symbol gene type direction distance location
map1lc3a map1lc3a coding upstream 237678 32848895 ~ 32879742 (+)
unm_sa1614 LOC108424671 coding upstream 354804 32649541 ~ 32765702 (+)
fer1l4 LOC106582641 coding upstream 496801 32520230 ~ 32620619 (+)
LOC110527660 LOC106565032 coding upstream 597708 32488867 ~ 32519712 (+)
rbm12 rbm12 coding upstream 625016 32480936 ~ 32492404 (+)
sdc4 LOC106582650 coding downstream 83280 33205314 ~ 33215912 (+)
LOC110528943 NA coding downstream 169672 33291706 ~ 33297076 (+)
LOC110527673 LOC106582652 coding downstream 377386 33499420 ~ 33562457 (+)
or134-1 LOC106582596 coding downstream 473190 33595224 ~ 33596343 (+)
LOC110528945 LOC106582597 coding downstream 494155 33616189 ~ 33617281 (+)
G598909 NA non-coding upstream 16073 33101048 ~ 33101347 (+)
G598897 NA non-coding upstream 26576 33090509 ~ 33090844 (+)
G598885 NA non-coding upstream 35845 33081174 ~ 33081575 (+)
G598714 LOC106582647 non-coding upstream 118586 32990134 ~ 32998834 (+)
G598683 NA non-coding upstream 189893 32927238 ~ 32927527 (+)
G598998 NA non-coding downstream 105434 33227468 ~ 33227774 (+)
G598999 NA non-coding downstream 106401 33228435 ~ 33228696 (+)
G599006 LOC106595915 non-coding downstream 112500 33234534 ~ 33235701 (+)
G599005 NA non-coding downstream 115349 33237383 ~ 33239788 (+)
G599007 NA non-coding downstream 118241 33240275 ~ 33240638 (+)
LOC110531742 LOC106594194 other upstream 1107490 32007023 ~ 32013203 (+)
G596297 NA other upstream 2035130 31081721 ~ 31082290 (+)
G596168 NA other upstream 2213533 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 3084799 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 3588510 29528027 ~ 29528910 (+)
G599004 NA other downstream 113779 33235813 ~ 33236636 (+)
G599123 NA other downstream 168492 33290526 ~ 33295528 (+)
G600013 NA other downstream 844255 33966289 ~ 33966755 (+)
G600431 NA other downstream 1637313 34759347 ~ 34759658 (+)
G600531 NA other downstream 1849094 34971128 ~ 34971405 (+)

Expression


Co-expression Network