G599055


Basic Information

Item Value
gene id G599055
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33205337 ~ 33215908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682446
TGTGCATAAAAATAGCTTTATTTCCAAATAAATCAGAACATGCATGCAGAAATCAATGATTCATTGACTTCTCCACTCAATTGGTGATTCACATATCTTGTGACAAAAGCAGCAGATTTTTCCCCATGCAAATGACACATGGCTCAATTCAGTTCCCCTGAACAATTACATAGCAATCCTTCTACAAAACATAAATATATACGGCTTAAAAATGTCAAGAAAAACataaaaatgtacaaaataaaaacTGTTAAAACTATTTGCTTCTTGAACTagtgtataaaacatttaaatcaaaTACAACAGCTAAGAGGGGAAAAGCCCCAACCTGAAAGGCAATACAATTTGATAGTTAAATTGAACAAGTACTCTAAAATATTGGACAGAAAAAGTTAGTACTAGCATTGGTAGTTAAACGTGTTTCCCACTATAGGCTTCTTAGTAGGGCTGTGGATCTTTCACAACGATTCAATACGCATCTAGATAGTTGGGCTCCGATATGATACAGGAATTGTGTGTTTTAGTTTGAAACGAGTCAGTACGATTCAGTTTAATTAGAGGAACAAATCGATGCGATTCGGTTCACTAACATTAGTTACATAAAACACATTCATTTCCCATTCTAAATTCAAATCTGCTGCCGATACAGCTCATAAGCTGAGTCTCCGAGCTGACGCGTGTGTAAATCGTATAAGTCTAGTGTATGTAGGCACCAGAGCTGAGCCATTAGGAAAACTGGGCATCTACCACCCGCCTATCGGGTGGATAGCTTTTTGTCAATTTAGTGATTTTCTGACTGATGCATACCACTGTACATTTGGAACGGTTGTCAAACATTTGGACCAGGGCCGCTCTGTATCGGTGAATCAATACATCCCGACTTCTTAGGCATGAAGAAACCAATTATTCCAAGCATTTACAGTAAGGTTAAACAAAGTATAAAATATTTGGTAAATAAACATCTGCCAAGAAATTGCTAAGTTCAAAGTTCATAATTTTATTAAAATGGCTACGTACAGTGATAATTGTGTTATGTCAACAGCGATAAACCATAATCTGTTCAAATAGCTTAGTTTACAAGCATTGTAATCACTGAGATGAGGTCTGACAAACTGAGCGCACCAatcatgtgttgttgtgttgcttgtTTTTACAAATAATTGTGGTGTGTGGATGAGTGGGTGTATTCACACAGCGATTTGTCCTAGGAATAAAAGCATGTTGATTTCTGTACTGTCCAAATAAAACACAGCCTGGAGAATCAAGCTTGGCCCCTGCTATATTTATAGAGTAGCATGTATCAAGGTATTTTCATCAATCTGGAATTCACTTCAGACTTAATCTGTTTGACAAAATACATTTGAATCTAAACAGAACCCGTCATGATTTCCCTACACAgggattatttttttaaatattgtaaAAGAAAATGCTACAGTAACAGACTTCTGTAGCACCAGTATGGGTACCAAGGTTCAGAGTAGGGGGAGGAAAATAAATATCTGTACCATGTCACCTCACTGAGTGAAGTTGTCATTGCACCTTGTTAGTGTCATAAAACAGAGTGTGGGAGAGAAAAGTCAAGATTTCACCCAATATCTTTCCTGTAGGGAAAAAAGGGGGGGGGCTGACAGTTAAAATGTTGATTCCGTTTCAAATGAACCACTTTAGAACTTGTGGTGGAATAGGAAAAGCAGTTTGTTTGGTGTTATTTTCTCCCTCTGGGACTTCCTAGCTTTACAGTAAGCAGGCAAGAGGAGAGGTTTGCTTTCGAGAGGCACTGGAGAGCCCGACGAAGGTGGGCTTTAGGCGTAGATCTCCGTTGTCGGAGCCTTTTTGTAAATGGGCTTCTTTCCCAGGTCGTAGCTGCCTTCGTCCTTCTTCTTCATGCGATAGATGAGCAGAAGGACGAGGAAGACGGCAAAGAGCAGCCCCACTGCTCCACCAGCAATCAGCTGCTAGGACCTCTGTTTTTCTGAAGATGCTCTCCTCCCCCGCATGGGCCATCAGTACGTTTGATGGGTACTCCTCGGGTTTGGGAGCACCCCGCACTGACACTTCATTGTTCTTCTGGACCAGTTCAATCTCATTCGGTGTGGGTTTGGACCTCAGGGGTATGTCCAGGTCTGGAATCTTGTTGTCGTTCATGTCAGGCTACGAGCAACAAACAGAGAATTATACCTACTTGAACTATAAAGAGGAAACGTGGCTCTCATTTCATACATGATAGCTAATTATGAGTAATCTTACCTTTGTCATGGCATTGTCATTTTTGATTGTAATAGTAGTTACTGAAGAGAGAAGAAAACAATATTTCATTATATTCTAACTTGTTATCAGCTTTTTAAAGCAAATTAGCAGATCTTTGCAAACACCAACCTCCATCTCCAGAGCCAGAGAAGTCTTCATCGTCCGTTTCATCCTCATTGTCAAATGTGTCGTGCTCCTCATCAAGGAAGCCAAAGTCGGAGCCGTTGGGGGCGTCACCAGACGCAACAGGCTCGTCGTGCGACGCGGCTTGGGTCGTCTTCATGGGCATCCATGTCTCAGTCTCCCGACCGACTCAGAGTAGACGGAGGCAAATAAAAACAACACGAGGAACACTTTGTGCATGTTTCTCTTGACAGTTTCTTCAACAAAAAGTGCTGTAAACTTGGGAAAAGAGTGGAATGAAAAGTCCTATAAACACACTCGAAAGTTCACGTTGCCCACTGTATCACCTTGCTATAACACAACTTGTATCTTCCAATTCAGTCAGTCACTGATTCAATCT

Function

NR:

description
syndecan-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU682446 True 2773 lncRNA 0.41 3 33205337 33215908

Neighbor

gene id symbol gene type direction distance location
gdf5 gdf5 coding downstream 55512 33146428 ~ 33149825 (-)
LOC110527668 LOC106582647 coding downstream 206464 32959859 ~ 32998873 (-)
fam83c fam83c coding downstream 254591 32941906 ~ 32950746 (-)
LOC110527666 if6 coding downstream 292197 32898346 ~ 32913140 (-)
LOC110527664 LOC106582643 coding downstream 382940 32792180 ~ 32822397 (-)
oser1 oser1 coding upstream 117088 33332996 ~ 33362244 (-)
LOC118965284 NA coding upstream 124762 33340670 ~ 33342591 (-)
LOC118965409 NA coding upstream 285299 33501207 ~ 33501261 (-)
LOC110527676 stk4 coding upstream 461436 33677344 ~ 33746700 (-)
LOC110527679 LOC106565035 coding upstream 554163 33770050 ~ 33774908 (-)
G599048 NA non-coding downstream 29042 33176000 ~ 33176295 (-)
G599047 NA non-coding downstream 29478 33175595 ~ 33175859 (-)
G598917 NA non-coding downstream 98114 33106979 ~ 33107223 (-)
G598892 NA non-coding downstream 118808 33086330 ~ 33086529 (-)
G598696 NA non-coding downstream 266664 32938370 ~ 32938673 (-)
G599058 NA non-coding upstream 21451 33237359 ~ 33239795 (-)
G599059 NA non-coding upstream 24834 33240742 ~ 33241142 (-)
G599072 NA non-coding upstream 25738 33241646 ~ 33241873 (-)
G599090 NA non-coding upstream 37784 33253692 ~ 33253904 (-)
G599092 NA non-coding upstream 38473 33254381 ~ 33254588 (-)
G598354 NA other downstream 785189 32418190 ~ 32420148 (-)
G596433 NA other downstream 2126019 31078512 ~ 31079318 (-)
G596352 NA other downstream 2268723 30936165 ~ 30936614 (-)
G596039 NA other downstream 2342017 30862857 ~ 30863320 (-)
G596094 NA other downstream 2360713 30844181 ~ 30844624 (-)
G599788 NA other upstream 460171 33674546 ~ 33677297 (-)
G600721 NA other upstream 1398584 34614492 ~ 34614875 (-)
G600872 NA other upstream 1749539 34965447 ~ 34966786 (-)

Expression


Co-expression Network