G599006 (LOC106595915)


Basic Information

Item Value
gene id G599006
gene name LOC106595915
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33234534 ~ 33235701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682388
GAAAAAGAGGACGTAACACATATTTGGGCAGTACATTtatacattgaaatgacgtaggtagattctagtagtcctggctcctggttggttgttcgtaggtgatagacagtcctctccagCCTGTTGTCGGTATCTCATTGGTTCTGGACAGAGTTCTTTGTCTTTGTAGCCCATCCCAAagggtttggagcagtgtatattcatgggttatcagtgtgtttaacaacagtccgtgaatgcgtcattacatgttttaatatgttattacaacaCCCCCTCTTCACGTCTATTAGACGTGACAAAAACTAAATGTAAGAAAAATAGAATAGGACATTTTAGGAAATTTGTAGTCCCCCTCTTCACGTCTCCAAAGAGACGTGAAAATTACTCATATGTGCATGTTTCAAACTCCACCAGAGGATCCtcctgttgtaggagggggaACATCAGTGCAGGGTCATTATTTGGTGCAATAGCAGAAGTAATAACTCGAGAAAACAGGGAGCGGGCACATGGGATGCAACAACAGCCACAGAGGGTTAATattgcaacaaacacagagatagagaccAGAATAGAAGAGACCAGGACCTTATATTTACCAAATGCATCCATCCAGGAGTCCCACTTGCTGGTATCAACCCCAGAGTGGGATTTCATTTTACCATTCAGGGTACGTAGTCCTTCTAACGCAACAGTGAGACTGCCATCAGAGGCTGTATTATTGGGGATAAATGTGCAACATTGCTCCCCAAACATAAAACATATACCACCCTTCTCAGCCAGCAACATGTCAACGGCAATGCGATTTTGAAAAGCCATAAGGGAGGTAGCCGCCAGTTGACCATGTACGGCCTCAAAACCTTGTTGAGTCCAGTTCCCTAATTTTTGGACATTGAAATGTATATAGTTAATGCGGTCAACATTTTTATTCACAGTGCACCACCAGCAGAGAGATGATTCAAAACCTGCGGCGACCTGGTCCACCAGCTTGTACTCATCAGGGACCCCCCTAGGAACACCTATAGCATCAATATATGTGGGATCCCCAACAGTCAGGGCTGCTTCCCGCTTGGTTCTGGTAGGCAGAAACTGTGGGTCCACAGCCTGTATCCGGGTCACCAAATCACCCACACCTATAGGGTAAACAGAGATAGGCAGTAGAAGT

Function

NR:

description
uncharacterized protein LOC110527670

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU682388 True 1168 lncRNA 0.45 1 33234534 33235701

Neighbor

gene id symbol gene type direction distance location
sdc4 LOC106582650 coding upstream 18622 33205314 ~ 33215912 (+)
map1lc3a map1lc3a coding upstream 354792 32848895 ~ 32879742 (+)
unm_sa1614 LOC108424671 coding upstream 471918 32649541 ~ 32765702 (+)
fer1l4 LOC106582641 coding upstream 613915 32520230 ~ 32620619 (+)
LOC110527660 LOC106565032 coding upstream 714822 32488867 ~ 32519712 (+)
LOC110528943 NA coding downstream 56005 33291706 ~ 33297076 (+)
LOC110527673 LOC106582652 coding downstream 263719 33499420 ~ 33562457 (+)
or134-1 LOC106582596 coding downstream 359523 33595224 ~ 33596343 (+)
LOC110528945 LOC106582597 coding downstream 380488 33616189 ~ 33617281 (+)
LOC110528946 LOC106582609 coding downstream 387536 33623237 ~ 33624475 (+)
G598999 NA non-coding upstream 5838 33228435 ~ 33228696 (+)
G598998 NA non-coding upstream 6760 33227468 ~ 33227774 (+)
G598929 NA non-coding upstream 112500 33117420 ~ 33122034 (+)
G598909 NA non-coding upstream 133187 33101048 ~ 33101347 (+)
G598897 NA non-coding upstream 143690 33090509 ~ 33090844 (+)
G599005 NA non-coding downstream 1682 33237383 ~ 33239788 (+)
G599007 NA non-coding downstream 4574 33240275 ~ 33240638 (+)
G599082 NA non-coding downstream 14295 33249996 ~ 33250503 (+)
G599098 oser1 non-coding downstream 109146 33344847 ~ 33362168 (+)
G599163 NA non-coding downstream 126655 33362356 ~ 33362706 (+)
LOC110531742 LOC106594194 other upstream 1224604 32007023 ~ 32013203 (+)
G596297 NA other upstream 2152244 31081721 ~ 31082290 (+)
G596168 NA other upstream 2330647 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 3201913 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 3705624 29528027 ~ 29528910 (+)
G599004 NA other downstream 112 33235813 ~ 33236636 (+)
G599123 NA other downstream 54825 33290526 ~ 33295528 (+)
G600013 NA other downstream 730588 33966289 ~ 33966755 (+)
G600431 NA other downstream 1523646 34759347 ~ 34759658 (+)
G600531 NA other downstream 1735427 34971128 ~ 34971405 (+)

Expression


Co-expression Network