G599058


Basic Information

Item Value
gene id G599058
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33237359 ~ 33239795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682451
ctcatcagaggaaaaggaaagactgtgAATATCTATAgagactcagcccatgcccatgaagcagtccacactgatggacccagaacttttatgagaagcacatggcccacacacacacgaaggcaaactaaagaccctccaaaagaccctcacataaaaaatatgactgacttatttattttatgatttattttgtgacgaatgcaatgtttgtgacagacacaacccaaagaaaccatatcgaacaccaatgggctcatacccATTACCTAATGCATGATTTCAGGTTATTAGCATAGAATACACAGACATGGGGGCGGATAAGGTGGTTAATGGGAAACAATACCTATTAGTGatggtggataggttttccaaatgggtagaggcaattCCAGCGGCGGGGGAGGATGCGAAGTCAGTTATAGGCCACAATCCCAAGATCTCATGGAACGCGCAAGTCAAACGTATGTGCCGGGTCGAAGTTGAAATGGGTCGAAGCCCTGCCCCTGGCGTTGATGGCCATGAGAGCCTCACCAGGGTCAggcacccatctctctcctcatgagataatgactggtagagtcatgcctggcccac
>TU682450
tgcagactgggacgaagacaggatgcacctgacccctcctatcaggtgttgtaccattgtgtgtggcccagagggggtggcagcaccggccatcctacgatcaaggaacctccatgcacccctggcctggacggctgaagcatcaacagccatagcactcctgaaaacagatctatcagcggcagcagctctgactgcacctgactacaagaacaagttccatttggatgtttctgaaagggaaggattcacctcatccgtcctattccagaaacaagagggggagagacgggtctTGATGCACTACTCTTCcaaacttgaccacattgaggtaggacagtcaacatgctccagatacgttgctgcagtagcaaaagctattgaaaaaa
>TU682449
GGAGGGCCATAGTGCAATGTGCAACATTTAgttgtttttaattgttttacATAATTTTTTATCGGACCCAGACATAGTGAATCGTCAATATGGCCTCAATTACCGTTCCCAAACTCAAATTCAATGAATATTTAGATCAGAGAATACAGGAAAGGGCAGGAGGAAAACAGGAATATAAAACAATAAAGAAGATATGGGGGGAAATTAGGCTAAGAGAGTGAGGCAGAAAATAATAGCAGCCATTTTTTTTCAAGAAAAAAGgaacgaaggagagagagagagtggaggcgGAGCTGAGAATAGGGACATGGGCAATAGAGGTGAAAAAAAGGACATGCCCACAAAAGAAACCTGATATGATGGGGGTGCTTGCTGGGGCCTCAGATGACGTCAGAGAAGGCacaaacaacaaccacaacacaccaccacccaccGTGACCACCCCATCGGCCCCGCTCTCTCCATACCCGCCACTGCCACAGGAAGAGAAGACTGAAGTGCCACCTCCCTATTCACAAAATCCATTCGCATACCTCCCACACAACCCATTTAAAaacccacaccacaccagcaGCCATACAGGCCCCGGTCTTCatggtgaggggaggacagctaaAAGGGAACATGACTGTGGGGATTCAAGAAGGCCACCTCGTCTGTGAAGAAAGGCCCGATTGCTCAAGCCCCACAGCACTACAAGGCCCAGGTGGGTCCCTGCTGAACTACCCACAAGGAAGGGAAGGTGGATCTCAACCGGGCCTCCTAAAGAGAGAAGGCCACGATCTTATTCAGTTCTCCTCTACTCCAAACACAGACAATTAGCTGAAATCATAGGCTTGACACAAGCACTGAAAGGAGCAGGAAGGGGCCTACCAACTTCCCCTACGCCCAGCAGTTGATCCACGCTTCGTTGAGTGCCAGTCTGGGAAGACCGCTTTGATGGGACAGATGcccagcctacatggaggagcctCTACATGGATACACTAACTGCAATGAAAATACTACTACCCAAAGCCACGAAcacaggatgaggaggaggaggaagaggaccccCTCCTCTACAATACAACCACCCAGGGCCCAGCCacatgcagcagcaacagcaagattacaaccaaccaCAGTTTCAAGGTATGGCAGGGAACACCATGCCCTGGCCATAAAAGATGCCCACACTGTCTGAAACCCCAGAAGTGTACTGGCCaaaatgcctacccacagggcctgccacccctcacatccagtttaagttcaaccaactgaaagctcaaatctacactctgcacccatataagactccccaagctgagatccattgcacactcaatgcaacagaaactgatgactgcctctacactgcagactgggacgaagacaggatgcacctgacccctcctatcaggtgttgtaccattgtgtgtggcccagagggggtggcagcaccggccatcctacgatcaaggaacctccatgcacccctggcctggacggctgaagcatcaacagccatagcactcctgaaaacagatctatcagcggcagcagctctgactgcacctgactacaagaacaagttccatttggatgtttctgaaagggaaggattcacctcatccgtcctattccagaaacaagagggggagaga

Function

NR:

description
uncharacterized protein LOC110528531

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU682451 False 597 lncRNA 0.47 1 33237359 33237955
TU682450 False 389 TUCP 0.51 1 33238047 33238435
TU682449 True 1649 TUCP 0.50 1 33238147 33239795

Neighbor

gene id symbol gene type direction distance location
gdf5 gdf5 coding downstream 87534 33146428 ~ 33149825 (-)
LOC110527668 LOC106582647 coding downstream 238486 32959859 ~ 32998873 (-)
fam83c fam83c coding downstream 286613 32941906 ~ 32950746 (-)
LOC110527666 if6 coding downstream 324219 32898346 ~ 32913140 (-)
LOC110527664 LOC106582643 coding downstream 414962 32792180 ~ 32822397 (-)
oser1 oser1 coding upstream 95041 33332996 ~ 33362244 (-)
LOC118965284 NA coding upstream 102715 33340670 ~ 33342591 (-)
LOC118965409 NA coding upstream 263252 33501207 ~ 33501261 (-)
LOC110527676 stk4 coding upstream 439389 33677344 ~ 33746700 (-)
LOC110527679 LOC106565035 coding upstream 532116 33770050 ~ 33774908 (-)
G599055 NA non-coding downstream 21451 33205337 ~ 33215908 (-)
G599048 NA non-coding downstream 61064 33176000 ~ 33176295 (-)
G599047 NA non-coding downstream 61500 33175595 ~ 33175859 (-)
G598917 NA non-coding downstream 130136 33106979 ~ 33107223 (-)
G598892 NA non-coding downstream 150830 33086330 ~ 33086529 (-)
G599059 NA non-coding upstream 2787 33240742 ~ 33241142 (-)
G599072 NA non-coding upstream 3691 33241646 ~ 33241873 (-)
G599090 NA non-coding upstream 15737 33253692 ~ 33253904 (-)
G599092 NA non-coding upstream 16426 33254381 ~ 33254588 (-)
G599583 NA non-coding upstream 52362 33290317 ~ 33295690 (-)
G598354 NA other downstream 817211 32418190 ~ 32420148 (-)
G596433 NA other downstream 2158041 31078512 ~ 31079318 (-)
G596352 NA other downstream 2300745 30936165 ~ 30936614 (-)
G596039 NA other downstream 2374039 30862857 ~ 30863320 (-)
G596094 NA other downstream 2392735 30844181 ~ 30844624 (-)
G599058 NA other upstream 92 33237359 ~ 33239795 (-)
G599788 NA other upstream 438124 33674546 ~ 33677297 (-)
G600721 NA other upstream 1376537 34614492 ~ 34614875 (-)
G600872 NA other upstream 1727492 34965447 ~ 34966786 (-)
G600881 NA other upstream 1762085 35001880 ~ 35055228 (-)

Expression


Co-expression Network