G599583


Basic Information

Item Value
gene id G599583
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33290317 ~ 33295690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682994
ggtaggctccctctctgttgttatcttggtTAGCTATTAGCTCCCTGAGTTCCTTAGCTCGAGCTATTGATGATTTCAGCAGCTCCTGCATCTTAGTCACGTTTGGAGCTCCCATCGGAGCTTGGGTGAGCACCATGACAATTTCTTCTTCGTTTTCGATATCCATGTTctgatgacagtcctccctatccgtctgatagaagtggtttgaatctaatcttgtttgtaggtgtcctctggtttcagaggtgagagagttcacagaggagcattgcggcctccgttcctgggggaggtctcctgctcctggaatcccagtttcgaactgttcacataccatatggccagccgttatccccagtgtaatttccccttttaactccccttggtctattctcagaactggagcctgtattgtgggaggtgccctgggcaggaatgggttgtgtgacgggctccggtgattttgtccctttgagtatggcgggggctgaactgcctccattgtcaattgtggatatagtgagggagaaacggccacagggggagccgtgggcaagttctcaggcggagctttaacatcccccgacgccacaatagccacgcacatcatgtctggtgtgtttttgggtagcaccctcctactctcctgtatggcccatgtacctatcttgagctccccctccgctctctctctctctctctcttgtacctacttttttgaacctgtgtatcttgtttctctccgcctcactcgcttttgcatgctctactgcgtcctctaattctgtctgcatatcttggagtttcccccctgtagggggtcctccgctaaaataacctgcttgtgtccattttatccgtaatcctttccacactttctccactttcccatactgttctttacctccc
>TU682995
ggtaggctccctctctgttgttatcttggtTAGCTATTAGCTCCCTGAGTTCCTTAGCTCGAGCTATTGATGATTTCAGCAGCTCCTGCATCTTAGTCACGTTTGGAGCTCCCATCGGAGCTTGGGTGAGCACCATGACAATTTCTTCTTCGTTTTCGATATCCATGTTctgatgacagtcctccctatccgtctgatagaagtggtttgaatctaatcttgtttgtaggtgtcctctggtttcagaggtgagagagttcacagaggagcattgcggcctccgttcctgggggaggtctcctgctcctggaatcccagtttcgaactgttcacataccatatggccagccgttatccccagtgtaatttccccttttaactccccttggtctattctcagaactggagcctgtattgtgggaggtgccctgggcaggaatgggttgtgtgacgggctccggtgattttgtccctttgagtatggcgggggctgaactgcctccattgtcaattgtggatatagtgagggagaaacggccacagggggagccgtgggcaagttctcaggcggagctttaacatcccccgacgccacaatagccacgcacatcatgtctggtgtgtttttgggtagcaccctcctactctcctgtatggcccatgtacctatcttgagctccccctccgctctctctctctctctctcttgtacctacttttttgaacctgtgtatcttgtttctctccgcctcactcgcttttgcatgctctactgcgtcctctaattctgtctgcatatcttggagtttcccccctgtagggggtcctccgctaaaataacctgcttgtgtccattttatccgtaatcctttccacactttctccactttcccatactgttctttacctccc
>TU682996
ggtaggctccctctctgttgttatcttggtTAGCTATTAGCTCCCTGAGTTCCTTAGCTCGAGCTATTGATGATTTCAGCAGCTCCTGCATCTTAGTCACGTTTGGAGCTCCCATCGGAGCTTGGGTGAGCACCATGACAATTTCTTCTTCGTTTTCGATATCCATGTTctgatgacagtcctccctatccgtctgatagaagtggtttgaatctaatcttgtttgtaggtgtcctctggtttcagaggtgagagagttcacagaggagcattgcggcctccgttcctgggggaggtctcctgctcctggaatcccagtttcgaactgttcacataccatatggccagccgttatccccagtgtaatttccccttttaactccccttggtctattctcagaactggagcctgtattgtgggaggtgccctgggcaggaatgggttgtgtgacgggctccggtgattttgtccctttgagtatggcgggggctgaactgcctccattgtcaattgtggatatagtgagggagaaacggccacagggggagccgtgggcaagttctcaggcggagctttaacatcccccgacgccacaatagccacgcacatcatgtctggtgtgtttttgggtagcaccctcctactctcctgtatggcccatgtacctatcttgagctccccctccgctctctctctctctctctcttgtacctacttttttgaacctgtgtatcttgtttctctccgcctcactcgcttttgcatgctctactgcgtcctctaattctgtctgcatatcttggagtttcccccctgtagggggtcctccgctaaaataacctgcttgtgtccattttatccgtaatcctttccacactttctccactttcccatactgttctttacctccc

Function

NR:

description
uncharacterized protein LOC110512511

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU682994 False 912 lncRNA 0.50 2 33290317 33295690
TU682995 False 912 lncRNA 0.50 2 33290317 33295690
TU682996 True 912 lncRNA 0.50 2 33290317 33295690

Neighbor

gene id symbol gene type direction distance location
gdf5 gdf5 coding downstream 140492 33146428 ~ 33149825 (-)
LOC110527668 LOC106582647 coding downstream 291444 32959859 ~ 32998873 (-)
fam83c fam83c coding downstream 339571 32941906 ~ 32950746 (-)
LOC110527666 if6 coding downstream 377177 32898346 ~ 32913140 (-)
LOC110527664 LOC106582643 coding downstream 467920 32792180 ~ 32822397 (-)
oser1 oser1 coding upstream 37306 33332996 ~ 33362244 (-)
LOC118965284 NA coding upstream 44980 33340670 ~ 33342591 (-)
LOC118965409 NA coding upstream 205517 33501207 ~ 33501261 (-)
LOC110527676 stk4 coding upstream 381654 33677344 ~ 33746700 (-)
LOC110527679 LOC106565035 coding upstream 474381 33770050 ~ 33774908 (-)
G599092 NA non-coding downstream 35729 33254381 ~ 33254588 (-)
G599090 NA non-coding downstream 36413 33253692 ~ 33253904 (-)
G599072 NA non-coding downstream 48444 33241646 ~ 33241873 (-)
G599059 NA non-coding downstream 49175 33240742 ~ 33241142 (-)
G599058 NA non-coding downstream 52362 33237359 ~ 33239795 (-)
G599614 NA non-coding upstream 66601 33362291 ~ 33362642 (-)
G599634 NA non-coding upstream 87121 33382811 ~ 33383239 (-)
G599635 NA non-coding upstream 88141 33383831 ~ 33384133 (-)
G599643 NA non-coding upstream 97678 33393368 ~ 33416307 (-)
G599699 NA non-coding upstream 195980 33491670 ~ 33551343 (-)
G598354 NA other downstream 870169 32418190 ~ 32420148 (-)
G596433 NA other downstream 2210999 31078512 ~ 31079318 (-)
G596352 NA other downstream 2353703 30936165 ~ 30936614 (-)
G596039 NA other downstream 2426997 30862857 ~ 30863320 (-)
G599788 NA other upstream 380389 33674546 ~ 33677297 (-)
G600721 NA other upstream 1318802 34614492 ~ 34614875 (-)
G600872 NA other upstream 1669757 34965447 ~ 34966786 (-)
G600881 NA other upstream 1706190 35001880 ~ 35055228 (-)

Expression


Co-expression Network