XLOC_002531


Basic Information

Item Value
gene id XLOC_002531
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3954090 ~ 3956849 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005979
caaaatgtataaccCTTGTTCACAATTCAtactattcatttttttatggtCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGAGGGCCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagccgttttaacttttattctatagcccgtactagtatctattttcttGTTACTAGTACTTATCCATTTTCTTAGTTCTTTTCCATTAAGTACtaactagtacttatttattagttactagtacttatttattagttactagtacttatttattagatactagtacttatttattagatactagtacttatttattagatactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattatatactagtacttatttatttgttactagtacttatttaatagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagttactagtacttatttattagttactagttcttatttattagttactagtacttatttattagttactagttcttatttattagatactagtacttattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttcccattcatttcaatgggaTCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTAaataatagatactagtacttatgtaTTAGGTACTAGTCCTTATTCATtaggtactagtatctatttaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatgtagagttgatgcttaacggataatcaattcactatttgctaatgcttaataaatgattcattattaTAAAAGTGTTACCTGAAAAGTTTTATAAATGGAAGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTtgctttgcctttgctttttttttaccttgctttTTGGAGATGTTTGTGATTTAGCAGTAAAAATAGTTTTTCATCCTCTTTTTATGTTTCCTTTTACTGCAGGACACAGAGCCAGAAGATATTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATTGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtGATATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCatggagtgcaaacacagatacacacacacacac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005979 True 2760 lncRNA 0.29 1 3954090 3956849

Neighbor

gene id symbol gene type direction distance location
XLOC_002530 FP236598.1 coding downstream 185324 3768651 ~ 3768766 (-)
XLOC_002529 CU571170.1 coding downstream 447436 3506540 ~ 3506654 (-)
XLOC_002528 tmed2 coding downstream 526460 3419832 ~ 3427630 (-)
XLOC_002527 ddx55 coding downstream 537832 3397871 ~ 3416258 (-)
XLOC_002526 naa25 coding downstream 559800 3364650 ~ 3394290 (-)
XLOC_002532 NA coding upstream 75629 4032478 ~ 4046317 (-)
XLOC_002533 NA coding upstream 81377 4038226 ~ 4040505 (-)
XLOC_002534 NA coding upstream 139022 4095871 ~ 4099183 (-)
XLOC_002535 grin3a coding upstream 322672 4279521 ~ 4316015 (-)
XLOC_002536 CABZ01073795.1 coding upstream 410581 4367430 ~ 4375190 (-)
XLOC_002525 NA non-coding downstream 621728 3322137 ~ 3332362 (-)
XLOC_002518 NA non-coding downstream 1054786 2897979 ~ 2899304 (-)
XLOC_002510 NA non-coding downstream 2000631 1948097 ~ 1953459 (-)
XLOC_002537 NA non-coding upstream 551540 4508389 ~ 4577852 (-)
XLOC_002538 NA non-coding upstream 616705 4573554 ~ 4583020 (-)

Expression


Co-expression Network