Fish Transcriptome and Expression Database

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model fish

XLOC_025311 (dre-mir-10c)

Basic Information

Item	Value
gene id	XLOC_025311
gene name	dre-mir-10c
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	23720651 ~ 23720745 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049958
CCTGTCATCTATATATACCCTGTAGATCCGGATTTGTGTAAACAGACGCACAGTCACAAATTCGTATCTAGGGGAGTATGTAGTTGATGTATAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000081638

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00049958	True	95	miRNA	0.41	1	23720651	23720745

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025309	hoxb5a	coding	upstream	10556	23707691 ~ 23710095 (+)
XLOC_025308	hoxb6a	coding	upstream	14905	23703704 ~ 23705746 (+)
XLOC_025306	hoxb7a	coding	upstream	24443	23691847 ~ 23696208 (+)
XLOC_025305	hoxb8a	coding	upstream	30170	23687909 ~ 23690481 (+)
XLOC_025304	hoxb9a	coding	upstream	38215	23677351 ~ 23682436 (+)
XLOC_025312	hoxb2a	coding	downstream	31405	23752150 ~ 23754831 (+)
XLOC_025313	NA	coding	downstream	209701	23930446 ~ 23967966 (+)
XLOC_025314	cbx1a	coding	downstream	329298	24050043 ~ 24071582 (+)
XLOC_025315	copz2	coding	downstream	373836	24094581 ~ 24111412 (+)
XLOC_025316	dre-mir-152	coding	downstream	375212	24095957 ~ 24096036 (+)
XLOC_025429	BX649540.1	misc	downstream	6527994	30248739 ~ 30249036 (+)
XLOC_025303	mir196b	non-coding	upstream	47196	23673377 ~ 23673455 (+)
XLOC_025301	NA	non-coding	upstream	52454	23665161 ~ 23668197 (+)
XLOC_025299	NA	non-coding	upstream	103850	23604478 ~ 23616801 (+)
XLOC_025298	NA	non-coding	upstream	196001	23517959 ~ 23524650 (+)
XLOC_025296	NA	non-coding	upstream	309130	23406471 ~ 23411521 (+)
XLOC_025317	NA	non-coding	downstream	400456	24121201 ~ 24133485 (+)
XLOC_025319	CR790362.1	non-coding	downstream	441124	24161869 ~ 24184426 (+)
XLOC_025323	NA	non-coding	downstream	496443	24217188 ~ 24217511 (+)

Expression

Co-expression Network